View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_25 (Length: 223)
Name: NF17018_high_25
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_25 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 37697225 - 37697015
Alignment:
| Q |
13 |
actcagcatataatgttgggcatgaactcactggcttttgatattgggaaagttgggctgtcgtagcatttggagactgtggatttgaggaacaataaaa |
112 |
Q |
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| T |
37697225 |
actcaacatataatgttgggcatgaactcactggcttttgatattgggaaagttgggctgtcgaagcatttggagactgtggatttgaggaacaataaaa |
37697126 |
T |
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| Q |
113 |
tctatggtacgctacctaagggattgaggaagctgaagtttttgagtgaatttaatgtgagctacaatagtttgtgtggtgagattccaataggtggaga |
212 |
Q |
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| T |
37697125 |
tctatggtacgctacctaagggattgaggaagctgaagtttttgagtgaatttaatgtgagctacaatagtttgtgtggtgagattccaataggtggaga |
37697026 |
T |
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| Q |
213 |
attgcaaaggt |
223 |
Q |
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| T |
37697025 |
attgcaaaggt |
37697015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 38013947 - 38014101
Alignment:
| Q |
47 |
cttttgatattgggaaagttgggctgtcgtagcatttggagactgtggatttgaggaacaataaaatctatggtacgctacctaagggattgaggaagct |
146 |
Q |
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| T |
38013947 |
cttttgatatcgggaaggttgggctgtccaagaatttggagtcggtggatttgagtaacaatagaatctacggtacgctacctgtgggatttgcgaagct |
38014046 |
T |
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| Q |
147 |
gaagtttttgagtgaatttaatgtgagctacaatagtttgtgtggtgagattcca |
201 |
Q |
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| T |
38014047 |
ggagcttttgaaggagtttaatgtgagctacaataatctgtgtggtaaaattcca |
38014101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 37994412 - 37994494
Alignment:
| Q |
46 |
gcttttgatattgggaaagttgggctgtcgtagcatttggagactgtggatttgaggaacaataaaatctatggtacgctacc |
128 |
Q |
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| T |
37994412 |
gcttttgattttgggaaagttgagttgccgaagaatttgggtaagttggatttgaggaacaataaaatctatggtacactacc |
37994494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 37996251 - 37996331
Alignment:
| Q |
141 |
gaagctgaagtttttgagtgaatttaatgtgagctacaatagtttgtgtggtgagattccaataggtggagaattgcaaag |
221 |
Q |
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| T |
37996251 |
gaagctgaaacttttgaaggagtttaatgtgagcaataataatttgtgtggggagattccagtaggtggaaaactgcaaag |
37996331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 25326897 - 25327011
Alignment:
| Q |
106 |
aataaaatctatggtacgctacctaagggattgaggaagctgaagtttttgagtgaatttaatgtgagctacaatagtttgtgtggtgagattccaatag |
205 |
Q |
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| T |
25326897 |
aataaaatctacggtgcgctacctaagggactgacaaagctcaaggttttgagtgactttaacgtgagctacaataatttgtgtggtgagattccaatag |
25326996 |
T |
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| Q |
206 |
gtggagaattgcaaa |
220 |
Q |
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| T |
25326997 |
gaggaaaattgcaaa |
25327011 |
T |
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