View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17018_high_4 (Length: 632)

Name: NF17018_high_4
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17018_high_4
NF17018_high_4
[»] scaffold0238 (2 HSPs)
scaffold0238 (1-243)||(12589-12831)
scaffold0238 (420-617)||(12999-13196)
[»] chr1 (4 HSPs)
chr1 (1-243)||(12604113-12604343)
chr1 (420-617)||(12603744-12603941)
chr1 (426-617)||(23261698-23261892)
chr1 (7-189)||(23261375-23261554)
[»] chr2 (3 HSPs)
chr2 (7-243)||(10452753-10452995)
chr2 (420-617)||(10453163-10453360)
chr2 (25-82)||(14455914-14455971)
[»] chr4 (4 HSPs)
chr4 (426-617)||(56478055-56478249)
chr4 (7-189)||(56478393-56478572)
chr4 (153-218)||(6898166-6898231)
chr4 (29-94)||(6898330-6898395)
[»] chr6 (1 HSPs)
chr6 (29-85)||(21547848-21547904)
[»] chr5 (1 HSPs)
chr5 (153-243)||(33619228-33619317)
[»] chr7 (1 HSPs)
chr7 (29-94)||(39741872-39741937)


Alignment Details
Target: scaffold0238 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12589 - 12831
Alignment:
Q  1 gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  12589 gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatgttgattttgattgacaatttcgttggc 12688  T
Q  101 aatttgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689 aatgtgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt 12788  T
Q  201 tgcaatggatgggaggatcaaggcttaaagctacggcagtgag 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12789 tgcaatggatgggaggatcaaggcttaaagctacggcagtgag 12831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 420 - 617
Target Start/End: Original strand, 12999 - 13196
Alignment:
Q  420 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12999 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaa 13098  T
Q  520 ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13099 ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 13196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12604343 - 12604113
Alignment:
Q  1 gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            || |||||||||||||    
T  12604343 gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgat------------tgacaatttcgttggc 12604256  T
Q  101 aatttgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12604255 aatttgaccgaccattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt 12604156  T
Q  201 tgcaatggatgggaggatcaaggcttaaagctacggcagtgag 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12604155 tgcaatggatgggaggatcaaggcttaaagctacggcagtgag 12604113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 420 - 617
Target Start/End: Complemental strand, 12603941 - 12603744
Alignment:
Q  420 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12603941 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaa 12603842  T
Q  520 ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12603841 ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcacttatctcctctattatatt 12603744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 426 - 617
Target Start/End: Original strand, 23261698 - 23261892
Alignment:
Q  426 tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac 525  Q
    |||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||    
T  23261698 tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttataagtaaataattttcccacatatcttcttcagctccac 23261797  T
Q  526 gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 617  Q
    || ||||||||||||||     ||| |||||||| ||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||    
T  23261798 gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaaaacggtcatttatctcctctattttatt 23261892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 23261375 - 23261554
Alignment:
Q  7 acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg 106  Q
    |||||||||||||||    |||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || ||||||||    
T  23261375 acataggtatgtaat----ttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttg 23261463  T
Q  107 accgacgattccatcatta--gttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatc 189  Q
    || ||| |||||||  |||   ||||||||||  ||      ||||||||  | ||||||||||||| |||||||| ||||||||||||||    
T  23261464 actgacaattccatagttaattttatactattccaattcaattttgatttcagcttttgattcatttatactttagattttagattgcatc 23261554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 10452753 - 10452995
Alignment:
Q  7 acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  10452753 acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatatcgattttgattgacaatttcgttggcaatttg 10452852  T
Q  107 accgacgattccatcattagttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt 200  Q
    ||  ||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10452853 actaacgattccatcattagttatactatttgaattttattttgattttggatttttattcatttctactttaggttttagattgcatcatgtgccatgt 10452952  T
Q  201 tgcaatggatgggaggatcaaggcttaaagctacggcagtgag 243  Q
    | ||||||||||||||||||||||||||||||||| |||||||    
T  10452953 tacaatggatgggaggatcaaggcttaaagctacgacagtgag 10452995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 420 - 617
Target Start/End: Original strand, 10453163 - 10453360
Alignment:
Q  420 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10453163 cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctcagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag 10453262  T
Q  520 ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 617  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10453263 ctccacgcctctcatttgcttctgtcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 10453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 14455971 - 14455914
Alignment:
Q  25 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttg 82  Q
    |||||||||||||||||||||| |||||| |||||||||  |||| |||| |||||||    
T  14455971 tttgttctttctcaatttcttactcaatttgttctttctcgatttaatatcgattttg 14455914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 426 - 617
Target Start/End: Complemental strand, 56478249 - 56478055
Alignment:
Q  426 tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac 525  Q
    |||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||    
T  56478249 tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttttaagtaaattattttcccacatatcttcttcagctccac 56478150  T
Q  526 gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt 617  Q
    || ||||||||||||||     ||| |||||||| ||| |||||||||| ||||| |||||||||||| | |||||||||||||||||||| ||||    
T  56478149 gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaatacggtcatttatctcctctattttatt 56478055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 56478572 - 56478393
Alignment:
Q  7 acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg 106  Q
    |||||||||||||||    |||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || ||||||||    
T  56478572 acataggtatgtaat----ttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttg 56478484  T
Q  107 accgacgattccatcattagtt--atactatttgaatttgattttg------gattttgattcatttctactttaggttttagattgcatc 189  Q
    || ||| |||||||  ||| ||  ||||||||  ||||  ||||||      | ||||||||||||| |||||||| ||||||||||||||    
T  56478483 actgacaattccatagttaattttatactattccaattcaattttgatttcagcttttgattcatttatactttagtttttagattgcatc 56478393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 6898231 - 6898166
Alignment:
Q  153 ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggat 218  Q
    ||||||||  |||||||| || |||||||| | ||||||||  ||||||||||| |||||||||||    
T  6898231 ttttgatttgtttctactataagttttagaatccatcatgtagcatgttgcaattgatgggaggat 6898166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 6898395 - 6898330
Alignment:
Q  29 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 94  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  6898395 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 6898330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 21547904 - 21547848
Alignment:
Q  29 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgatt 85  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||| ||||||||||    
T  21547904 ttctttctcaatttcttattcagttttttctttctcaatttgatatcgattttgatt 21547848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 33619317 - 33619228
Alignment:
Q  153 ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 243  Q
    ||||||||  |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| ||  ||||||||    
T  33619317 ttttgatttgtttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag 33619228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 39741937 - 39741872
Alignment:
Q  29 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 94  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  39741937 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 39741872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University