View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_5 (Length: 598)
Name: NF17018_high_5
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 11393249 - 11392670
Alignment:
| Q |
1 |
taaatgtcacaaacgcctatc-ttataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgccaccaaagttctatcgtttgagcta |
99 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||| || ||||| ||| ||||||||||||||||||||||||| |
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| T |
11393249 |
taaatatcacaaacgcctatccttataaataaccgtggcatccctatgttatgaagcagaatacctcatgcatgacaccaaagttctatcgtttgagcta |
11393150 |
T |
|
| Q |
100 |
aatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaattatggaaccaagg |
199 |
Q |
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||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11393149 |
aatggaatggaaatcaaaaccaccattacagatcaaaagaaagtgattgacgaacatatatcgtctttcttacgccctacagacaatcatggaaccaagg |
11393050 |
T |
|
| Q |
200 |
tgatcggatttgataccgagtggcgtaaaattatccttaatgatcgtgatgaaaccaattccgggaccaaaccgggaactattcaactttgtgatggaca |
299 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11393049 |
tgatcggatttgatactgagtggcgtaaaattatcgataaggatcaagatggaaccaattcccggaccaaaccgggaactattcaactttgtgatggaca |
11392950 |
T |
|
| Q |
300 |
ttcgtgtcttattattgagttacattgtggctttcgggattataatcttcccctttcactgcttaattttcttcgtcaaccaaattataccttcgtgggc |
399 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11392949 |
ttcgtgtcttattattgagttacattattgctttcgggattataatcttcccctttcactgcttaattttcttcgtcaaccaaattataccttcgtgggc |
11392850 |
T |
|
| Q |
400 |
tgcggaattaaagaaaattttgttaacttggagaagcatcatgggattggatgcagaaatgcagttgaacttggaccattggctgctacactcatgaaaa |
499 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
11392849 |
tgcggaattaaagacaattttattaacttggagaagcatcatgggattggaagcagaaatgcagttgaacttggaccattggctgctaaacttatgaaaa |
11392750 |
T |
|
| Q |
500 |
tgcctcgtttaagctattgcggcgttgatgaacttgcatttgtggtcaataaacttgatcttcgcaagtaccggccttct |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11392749 |
tgcctcgtttaagctattgcggcgttgatgaacttgcatttgtggtcaataaacttgatcttcgcaagtaccggccttct |
11392670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 2 - 579
Target Start/End: Complemental strand, 11387254 - 11386682
Alignment:
| Q |
2 |
aaatgtcacaaacgcctatct-tataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgccaccaaagttctatcgtttgagctaa |
100 |
Q |
| |
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|||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11387254 |
aaatgtcacacacgcttatccctataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgacaccaaagttctatcgtttgagctaa |
11387155 |
T |
|
| Q |
101 |
atggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaattatggaaccaaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
11387154 |
atggaatggaaatcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatgtcgtctttcttacaccctacagacaattatgtaaccaaggt |
11387055 |
T |
|
| Q |
201 |
gatcggatttgataccgagtggcgtaaaattatc-cttaatgatcgtgatgaaaccaattccgggaccaaaccgggaactattcaactttgtgatggaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
11387054 |
gatcggatttgataccgagtggcgtaaaattatcggtaaatgatcatgatgaaaccaattcccagaccaaaccgggaactcttcaactttgtgatggaca |
11386955 |
T |
|
| Q |
300 |
ttcgtgtcttattattgagttacattgtggctttcgggattataatcttcccctttcactgcttaattttcttcgtcaaccaaattataccttcgtgggc |
399 |
Q |
| |
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||| ||||||||||||||||||||||| |||| || | || |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11386954 |
ttcatgtcttattattgagttacattg------tcggcataaggatgttcccctttctctgcttaattttctttgtcaaccaaattataccttcgtgggc |
11386861 |
T |
|
| Q |
400 |
tgcggaattaaagaaaattttgttaacttggagaagcatcatgggattggatgcagaaatgcagttgaacttggaccattggctgctacactcatgaaaa |
499 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
11386860 |
tgcggaattaaggaaaattttgttaacttggagaagcatcatgggattggatgcagaaatgcagttgaacttggacccttggcagctacagtcatgaaaa |
11386761 |
T |
|
| Q |
500 |
tgcctcgtttaagctattgcggcgttgatgaacttgcatttgtggtcaataaacttgatcttcgcaagtaccggccttct |
579 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |
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| T |
11386760 |
agcttcgtttaagctattgcggcattgatgaacttgcatttgtggtcaat-aacttgatcttcgaaagtacaggccttct |
11386682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 347 - 569
Target Start/End: Complemental strand, 17198424 - 17198202
Alignment:
| Q |
347 |
ttcccctttcactgcttaattttcttcgtcaaccaaattataccttcgtgggctgcggaattaaagaaaattttgttaacttggagaagcatcatgggat |
446 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||| || || || ||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
17198424 |
ttcccctctcacttcttaattttcttcgtcaaccaaattataccttcgttggttgtggcattaaggataattttgttaacttggagaagcatcatgggat |
17198325 |
T |
|
| Q |
447 |
tggatgcagaaatgcagttgaacttggaccattggctgctacactcatgaaaatgcctcgtttaagctattgcggcgttgatgaacttgcatttgtggtc |
546 |
Q |
| |
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|||||||||||||||||||||||||||| | | ||||| || |||||||| ||||| |||||| | ||| ||||||||||||||||||||||||||| |
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| T |
17198324 |
tggatgcagaaatgcagttgaacttggaaccctagctgccactctcatgaatgcgcctcatttaagtttttgtggcgttgatgaacttgcatttgtggtc |
17198225 |
T |
|
| Q |
547 |
aataaacttgatcttcgcaagta |
569 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
17198224 |
gataaacttgatcttcgtaagta |
17198202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 17198660 - 17198516
Alignment:
| Q |
90 |
gtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaattat |
189 |
Q |
| |
|
||||||||| |||||| |||||| ||||||| | |||||| || ||||| ||||||||| |||||||| ||||||||||||||||| ||||| | |
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| T |
17198660 |
gtttgagcttaatggagatgaaatccaaaccaccgtgacagatgatgagaaattgattgacgatcatatatcatctttcttacgccctaccaacaatcac |
17198561 |
T |
|
| Q |
190 |
ggaaccaaggtgatcggatttgataccgagtggcgtaaaattatc |
234 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||| ||||||| |
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|
| T |
17198560 |
ggaacgaaggttattgggattgataccgagtggcgtccaattatc |
17198516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 440 - 563
Target Start/End: Original strand, 38820817 - 38820940
Alignment:
| Q |
440 |
atgggattggatgcagaaatgcagttgaacttggaccattggctgctacactcatgaaaatgcctcgtttaagctattgcggcgttgatgaacttgcatt |
539 |
Q |
| |
|
||||| || ||||||||||||| || ||||||||||| |||||||||| | | ||| |||||| |||| || | ||||||||||||||||||||| | |
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|
| T |
38820817 |
atggggttagatgcagaaatgctgtggaacttggacccttggctgctagtgttaggaagatgcctagtttgagtttttgcggcgttgatgaacttgctgt |
38820916 |
T |
|
| Q |
540 |
tgtggtcaataaacttgatcttcg |
563 |
Q |
| |
|
|| |||||||| ||||||||||| |
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|
| T |
38820917 |
tgctgtcaataagcttgatcttcg |
38820940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 485
Target Start/End: Original strand, 38814106 - 38814236
Alignment:
| Q |
355 |
tcactgcttaattttcttcgtcaaccaaattataccttcgtgggctgcggaattaaagaaaattttgttaacttggagaagcatcatgggattggatgca |
454 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| || || || ||||| ||||| ||||| | ||| ||||||||||| |||| ||||||| | |
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| T |
38814106 |
tcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgta |
38814205 |
T |
|
| Q |
455 |
gaaatgcagttgaacttggaccattggctgc |
485 |
Q |
| |
|
||||||| |||||||||||||| || ||||| |
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|
| T |
38814206 |
gaaatgctgttgaacttggaccctttgctgc |
38814236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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