View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_1 (Length: 783)
Name: NF17018_low_1
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 46838175 - 46837784
Alignment:
| Q |
16 |
atgaattaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagagtgatttata |
115 |
Q |
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| T |
46838175 |
atgaattaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagactgatttata |
46838076 |
T |
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| Q |
116 |
cgtacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgagtacttgaggatggcagcaagaatcc |
215 |
Q |
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| T |
46838075 |
cgtacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgagtacttgaggatggcagcaagaatcc |
46837976 |
T |
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| Q |
216 |
tttctttgtctctggttgggaatgcttccaacagtttcccatctttgtagaagtggaagagaggcactgcctgcattagtttgttgtcaataaagcatga |
315 |
Q |
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| T |
46837975 |
tttctttgtctctggttgggaatgcttccaacagtttcccatctttgtagaagtggaagagaggcactgcctgcattagtttgttgtcaataaagcatga |
46837876 |
T |
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| Q |
316 |
atatggttttgtactgataattattattttgcaataggttgattttggtacaaatgacgcacagctagatatttaaagcatgtagggagaag |
407 |
Q |
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| T |
46837875 |
atatggttttgtactgataattattattttgcaataggttgattttggtacaaatgacgcacagctagatatttaaagcatgtagggagaag |
46837784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 437 - 767
Target Start/End: Complemental strand, 46837697 - 46837369
Alignment:
| Q |
437 |
caagattatgcatcaattgaatgcatcatactaagagactaatcatcaaacttgtaaagacaaattatgagacaagaaacatgtagaagatactgatggc |
536 |
Q |
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| T |
46837697 |
caagattatgcatcaattgaatgcaa---actaagagactaatcatcaaacttgtaaagacaagttatgagacaagaaacatgtagaagatactgatggc |
46837601 |
T |
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| Q |
537 |
agatacatgctagtctgaaatcaataaaagagaaataaataccctgattctaagtcgttccgcaacctcggattcttcatcatactcatcaatcacctgc |
636 |
Q |
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| T |
46837600 |
agatacatgctagtctgaaatcaataaaagagaaataaataccctgattctaagtcgttccgcaacctcggattcttcatcatactcatcaatcacctgc |
46837501 |
T |
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| Q |
637 |
aataagagcggagtgataactaagagtcttgataaaagttaactttctcaatctaattattaatcgaat-aaaatctctagtttgagagtcaatgataaa |
735 |
Q |
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| T |
46837500 |
aataagaggggagtgataactaagagtcttgataaaagttaactttctcaatctaattattaatcgaataaaaatctctagtttgagagtcaatgataaa |
46837401 |
T |
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| Q |
736 |
gcaaataatgataatacaaatgtgatacattg |
767 |
Q |
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| T |
46837400 |
gcaaataatgataatacaaatgtgatacattg |
46837369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 46837752 - 46837709
Alignment:
| Q |
408 |
ttgagagataagtgtcaaaagagagtagtcaagattatgcatca |
451 |
Q |
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| T |
46837752 |
ttgagagataagtgtcaaaagagagtagtcaagattatgcatca |
46837709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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