View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_11 (Length: 468)
Name: NF17018_low_11
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 51328940 - 51329355
Alignment:
| Q |
16 |
gtttgttggcccattttggatgtatccttatttgttaatggaaaaagtgagatgtatgaatataaggttgtgccagaattaactaaagttcaagcatagt |
115 |
Q |
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| T |
51328940 |
gtttgttggcccattttggatgtatccttatttgttaatggaaaaagtgagatgtatgaatataaggttgtgccagaattaactaaagttcaagcatagt |
51329039 |
T |
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| Q |
116 |
cagtcataccagtacacaagtgttggaagagaatgatggagactatttgtttgaggaccattgaattcagtcttgtattgagtacccaccccaactcctc |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51329040 |
ca----taccagtacacaagtgttggaagagaatgatggagactatttgtttgaggaccattgaattcagtcttgtattgagtacccaccccaactcctc |
51329135 |
T |
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| Q |
216 |
aaaccaatataagtagnnnnnnnttaaattgacagcttggtccatactatcaccaacttcattttggcaaattggagttactatgatgttcagccttttg |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51329136 |
aaaccaatataagtagaaaaaaattaaattgacagcttggtccatactatcaccaacttcattttggcaaattggagttactatgatgttcagccttttg |
51329235 |
T |
|
| Q |
316 |
tagtaaacttggatgcatttattccagctaaacattcatagattttaaatattggacaccagttgttattttctgttcatgctcacagctcatgtgttat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51329236 |
tagtaaacttggatgcatttattccagctaaacattcatagattttaaatattggacaccagttgttattttctgttcatgctcacagctcatgtgttat |
51329335 |
T |
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| Q |
416 |
ctaaaatcatattttagtca |
435 |
Q |
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|||||||||||||||||||| |
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| T |
51329336 |
ctaaaatcatattttagtca |
51329355 |
T |
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