View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_12 (Length: 446)
Name: NF17018_low_12
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 22371475 - 22371155
Alignment:
| Q |
1 |
acatgatgaaaatgctcaacaaccaagtagcacgataacataatttagaaatatatttcggcctcatcttgttgacaaccttctccagctcatcaaatgg |
100 |
Q |
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| T |
22371475 |
acatgatgaaaatgctcaacaaccaagtagcacgataacagaatttagaaatatatttcggcctcatcttgttgacaaccttctccagctcatcaaatgg |
22371376 |
T |
|
| Q |
101 |
attggatggtatccaatagacctattagattgagcaaaaaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagatcnnnnn |
200 |
Q |
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| T |
22371375 |
attggatggtatccaatagacctataagattgagcaaagaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagatcaaaaa |
22371276 |
T |
|
| Q |
201 |
nnttgttcctttgcataaccacttgcatcattcttaccagtcaagcagtggtatgacagcaaggtttcgatgttgcgtccaaccatggcaaaaacttaaa |
300 |
Q |
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| T |
22371275 |
aattgttcctttgcataaccacttgcatcatccttaccagtcaagcagtggtatga----------------------ccaaccatggcagaaacttaaa |
22371198 |
T |
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| Q |
301 |
aaacgaacaggagtactgtatggcacagtttgaggcaccttct |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22371197 |
aaacgaacaggagtactgtatggcacagtttgaggcaccttct |
22371155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 22371095 - 22371014
Alignment:
| Q |
347 |
tgacgttcaattactgtgaattggctcttgatactaaaaggtggttggaacgacaatgtggcgactacgtgacggtgctgac |
428 |
Q |
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| T |
22371095 |
tgacgttcaattactgtgaattggctcttgatactaaaaggtggttggaacgacaatgtggcgactacgtgacggtgctgac |
22371014 |
T |
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