View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17018_low_13 (Length: 422)

Name: NF17018_low_13
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17018_low_13
NF17018_low_13
[»] chr4 (12 HSPs)
chr4 (130-242)||(2490237-2490349)
chr4 (129-252)||(2518220-2518343)
chr4 (120-209)||(2533369-2533458)
chr4 (36-128)||(2489974-2490066)
chr4 (282-363)||(2525117-2525203)
chr4 (36-128)||(2524801-2524893)
chr4 (162-215)||(2476762-2476815)
chr4 (337-405)||(2490412-2490480)
chr4 (129-189)||(2525055-2525115)
chr4 (262-368)||(2533525-2533636)
chr4 (180-252)||(2377247-2377319)
chr4 (166-197)||(2462636-2462667)
[»] chr6 (1 HSPs)
chr6 (163-271)||(8285903-8286011)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 2490237 - 2490349
Alignment:
Q  130 ttttccttctggacaataaaaaatgtggacagaggagtcatacaactttcatttataagctttcaaatgaaagctttacatctcttgtaatacaatatag 229  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  2490237 ttttcctgctggacaataaagaatgtggacagaggagtcatacaaattttatttataagctttcaaatgaaaccttcacatctcttataaaacaatatag 2490336  T
Q  230 ctcacaaatctga 242  Q
    |||||||||||||    
T  2490337 ctcacaaatctga 2490349  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 2518220 - 2518343
Alignment:
Q  129 tttttccttctggacaataaaaaatgtggacagaggagtcatacaactttcatttataagctttcaaatgaaagctttacatctcttgtaatacaatata 228  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||| | |||||    
T  2518220 tttttcctgctggacaataaagaatatggacagaggagtcatacaactttaatttataagctttcaaatgaaacctttatatctcttataatgctatata 2518319  T
Q  229 gctcacaaatctgaacccatcttg 252  Q
    |||||||||| | ||||| |||||    
T  2518320 gctcacaaatttaaacccctcttg 2518343  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 2533369 - 2533458
Alignment:
Q  120 cacgatttatttttccttctggacaataaaaaatgtggacagaggagtcatacaactttcatttataagctttcaaatgaaagctttaca 209  Q
    ||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||    
T  2533369 cacgatttatttttcctgctggacaataaagattgtggacagaagagtcatacaactttcatttaaaagctttcaaatgaaacctttaca 2533458  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 2489974 - 2490066
Alignment:
Q  36 tttaaccaaaataaaccaatcctcgtcatatgcattcatgtttataataaacttgaacttgaattctgtatagcatataaggagcacgattta 128  Q
    |||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||| ||||||||| | || ||||||||||||||||||    
T  2489974 tttaaccaaaataaaccaatcctcgtcaaatgtattcatgtttgttataaacttgaactcgaattctgttttgcctataaggagcacgattta 2490066  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 2525117 - 2525203
Alignment:
Q  282 aaaattcattcagtatgaatgtacgaaaagaagaaatgtgttttcaacggggaa-----taactttataatcaaattgagaaataaa 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||      |||||||||||||||||||||||||||    
T  2525117 aaaattcattcagtatgaatgtacgaaaagaagaaatgtgttttcaacaggcaaataagaaactttataatcaaattgagaaataaa 2525203  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 2524801 - 2524893
Alignment:
Q  36 tttaaccaaaataaaccaatcctcgtcatatgcattcatgtttataataaacttgaacttgaattctgtatagcatataaggagcacgattta 128  Q
    ||||||||||||||||  |||||||||| |||||||||||||| | ||||||| ||| ||||||||||| |  ||||||||||||||||||||    
T  2524801 tttaaccaaaataaacggatcctcgtcaaatgcattcatgtttgttataaactagaatttgaattctgttttccatataaggagcacgattta 2524893  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 2476762 - 2476815
Alignment:
Q  162 aggagtcatacaactttcatttataagctttcaaatgaaagctttacatctctt 215  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  2476762 aggagtcatacaactttgatttataagctttcaaatgaaaactttacatctctt 2476815  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 2490412 - 2490480
Alignment:
Q  337 aactttataatcaaattgagaaataaactaaataacacaaacttggatagatcatatctaacccaatac 405  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||| | || ||||||||||||||||    
T  2490412 aactttataatcaaattgagaaataaaataaataagtcaaacttggaaaaataatatctaacccaatac 2490480  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 2525055 - 2525115
Alignment:
Q  129 tttttccttctggacaataaaaaatgtggacagaggagtcatacaactttcatttataagc 189  Q
    ||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2525055 tttttgctgctggacaataaagaatgtggacataggagtcatacaactttcatttataagc 2525115  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 368
Target Start/End: Original strand, 2533525 - 2533636
Alignment:
Q  262 taaaggactaaggcgaagtaaaaattcattcagtatgaatgtacgaaaagaagaaatgtgttttcaacggggaa-----taactttataatcaaattgag 356  Q
    ||||||||||| || |||  |||||||||  ||||||||||||| ||||||||||||||||||||||  |||||      ||||||||| ||||||||||    
T  2533525 taaaggactaaagcaaagccaaaattcatcaagtatgaatgtactaaaagaagaaatgtgttttcaaaagggaaataagcaactttatagtcaaattgag 2533624  T
Q  357 aaataaactaaa 368  Q
    ||||||| ||||    
T  2533625 aaataaaataaa 2533636  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 2377319 - 2377247
Alignment:
Q  180 atttataagctttcaaatgaaagctttacatctcttgtaatacaatatagctcacaaatctgaacccatcttg 252  Q
    ||||||||||| |||||||||| | ||| ||||||| ||||| |||  ||||||||||| ||||||| |||||    
T  2377319 atttataagctctcaaatgaaatccttaaatctcttataatataatgcagctcacaaatttgaacccctcttg 2377247  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 2462636 - 2462667
Alignment:
Q  166 gtcatacaactttcatttataagctttcaaat 197  Q
    ||||||||||||||||||||||||||||||||    
T  2462636 gtcatacaactttcatttataagctttcaaat 2462667  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 8286011 - 8285903
Alignment:
Q  163 ggagtcatacaactttcatttataagctttcaaatgaaagctttacatctcttgta--atacaatatagctcacaaatctgaacccatcttgctttaaag 260  Q
    |||||||| ||| ||| ||||||||||||||||||||||  || ||||||||| ||  ||||||||||| |||||||| |||| || |||||  ||| ||    
T  8286011 ggagtcatgcaattttaatttataagctttcaaatgaaaagttcacatctcttataatatacaatatagatcacaaatatgaatccgtcttg--ttatag 8285914  T
Q  261 ttaaaggacta 271  Q
    |||||||||||    
T  8285913 ttaaaggacta 8285903  T

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