View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_18 (Length: 298)
Name: NF17018_low_18
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 30718021 - 30717918
Alignment:
| Q |
178 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtacaatttctctatgattttcctttttatctatttatttatca |
277 |
Q |
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| T |
30718021 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtacaatttctctctgattttcctttttatctatttatttatca |
30717922 |
T |
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| Q |
278 |
tata |
281 |
Q |
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|||| |
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| T |
30717921 |
tata |
30717918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 30718184 - 30718099
Alignment:
| Q |
14 |
gaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
99 |
Q |
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| T |
30718184 |
gaacgagaagatctgcctcgaagattacattcatcttcttcactctcgccacaccgttgatctcaccatgaatcaactcaatcagg |
30718099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 30894286 - 30894354
Alignment:
| Q |
178 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtacaatttctct |
246 |
Q |
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| T |
30894286 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtacaatttctct |
30894354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 30894125 - 30894210
Alignment:
| Q |
14 |
gaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
99 |
Q |
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|||||| ||| |||||||||||||||| ||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| |
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| T |
30894125 |
gaacgaaaagctctgcctcgaagattacattcatcttcttcactctcgcaacaccaatgatctcactatgaatcaactcaatcagg |
30894210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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