View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_22 (Length: 250)
Name: NF17018_low_22
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_22 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 7258005 - 7258071
Alignment:
| Q |
184 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatc |
250 |
Q |
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| T |
7258005 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatc |
7258071 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
| Q |
76 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
135 |
Q |
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| T |
7257902 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
7257961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
| Q |
8 |
catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa |
70 |
Q |
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| T |
7257800 |
catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa |
7257862 |
T |
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