View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_23 (Length: 249)
Name: NF17018_low_23
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1955580 - 1955796
Alignment:
| Q |
1 |
ctctatcttaggtggattggtgggcatgaaaagaccaaataatcatggtgttccatattctctaactgaagaatttgtcactgtctataggatgcatgca |
100 |
Q |
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| T |
1955580 |
ctctatcttaggtggattggtgggcatgaaaaaaccagataatcatggtgttccatactctctaactgaagaatttgtgactgtctataggatgcatgca |
1955679 |
T |
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| Q |
101 |
ctcctacctgattctttgcatttgagagatatatctgccaccccaggagaaaacaaatctccaccaccaatcaaagagtatgccaaaatatttttgaacc |
200 |
Q |
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| T |
1955680 |
ctcctacctgattctttgcatttgagagacatatctgccaccccaggacaaaacaaatctccaccactgatcaaagagtatgccaaaatatttttacacc |
1955779 |
T |
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| Q |
201 |
aaca-tataacttatta |
216 |
Q |
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| T |
1955780 |
aatattataacttatta |
1955796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 1926763 - 1926888
Alignment:
| Q |
12 |
gtggattggtgggcatgaaaagaccaaataatcatggtgttccatattctctaactgaagaatttgtcactgtctataggatgcatgcactcctacctga |
111 |
Q |
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| T |
1926763 |
gtggatttgtgggtatgaagaaaccaaaaaatcatggtgttccatattctttaactgaggaatttgtgagtgtctataggatgcatcaactcctacccaa |
1926862 |
T |
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| Q |
112 |
ttctttgcatttgagagatatatctg |
137 |
Q |
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| T |
1926863 |
ttctctgcatttgagggacatatctg |
1926888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 1940859 - 1941039
Alignment:
| Q |
12 |
gtggattggtgggcatgaaaagaccaaataatcatggtgttccatattctctaactgaagaatttgtcactgtctataggatgcatgcactcctacctga |
111 |
Q |
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| T |
1940859 |
gtggatttgtgggcatgaagagagcagaaaatcatggtgttccatactctttaactgaggaatttgctagtgtctatagaatgcatccactcctgcctga |
1940958 |
T |
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| Q |
112 |
ttctttgcatttgagagatatatctgccaccccaggagaaaacaaatctccaccaccaatcaaagagtatgccaaaatatt |
192 |
Q |
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| T |
1940959 |
tttcctgcacttgagagacacatctgcctctcctgggcctaacaaatctccgccattaatcaaagagtatgacaatatatt |
1941039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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