View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_25 (Length: 243)
Name: NF17018_low_25
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 10030830 - 10030617
Alignment:
| Q |
13 |
agaatatacctaatttatacaaaaagaaatatttaaacttcatacatgtttgaacagaaaaattagcacaaaggtgaaagattccattgagcttcattgc |
112 |
Q |
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| T |
10030830 |
agaatatacctaatttatacaaaaagaaatatttaaacttcatacatgtttgaacagaaaaattagcacaaaggtgaaagattccattgagcttcattgc |
10030731 |
T |
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| Q |
113 |
aatcctgaacatttttcatgtactcttgcacaccattaattgcataaagtgaagctgatatttgcctttcaactttcatcctttcaaattctgaaactcc |
212 |
Q |
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| T |
10030730 |
aatcctgaacatttttcatgtactcttgaacaccattaattgcataaagtgaagctgatatttgcctttcaactttcatcctttcaaattctgaaactcc |
10030631 |
T |
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| Q |
213 |
tttatccaccatat |
226 |
Q |
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|||||| ||||||| |
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| T |
10030630 |
tttatcaaccatat |
10030617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 33273702 - 33273850
Alignment:
| Q |
60 |
gtttgaacagaaaaattagcacaaaggtgaaagattccattgagcttcattgcaatcctgaacatttttcatgtactcttgcacaccattaattgcataa |
159 |
Q |
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|||| ||||||| || ||||||| |||| ||||| |||| |||||||| | || |||||| ||| |||||| || ||||| |||||||| |||||| |
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| T |
33273702 |
gttttaacagaacaaggagcacaagggtggaagatcccataaggcttcattagactcttgaacagtttccatgtattcatgcactccattaatagcataa |
33273801 |
T |
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| Q |
160 |
agtgaagctgatatttgcctttcaactttcatcctttcaaattctgaaa |
208 |
Q |
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| T |
33273802 |
agtgaagctgatatctgtctttcaaccttcattctttcaaattctgaaa |
33273850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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