View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_low_3 (Length: 655)
Name: NF17018_low_3
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 16 - 628
Target Start/End: Complemental strand, 39863180 - 39862568
Alignment:
| Q |
16 |
taattaactacaaagtcatagtaatcttatactagcaatttaattaaatgcagtaaatttcattcattccctctttataggtggaatcagataaatgatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863180 |
taattaactacaaagtcatagtaatcttatactagcaatttaattaaatgcagtaaatttcattcattccctctttataggtggaatcagataaatgatc |
39863081 |
T |
|
| Q |
116 |
atggcacaagtcatttgagcataatagattttgagagaaatgctgtttccatgaccactacagtaaattcgtatttcggtgcaacaatactttcaccaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863080 |
atggcacaagtcatttgagcataatagattttgagagaaatgctgtttccatgaccactacagtaaattcgtatttcggtgcaacaatactttcaccaag |
39862981 |
T |
|
| Q |
216 |
tacaggaatagtactcaacaatgagatggatgatttttccatgcctataaaaaatgtttccaaggatgttcgaccgcctgctcctgccaatttcgtcgtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39862980 |
tacaggaatagtactcaacaatgagatggatgatttttccatgcctataaaaaatgtttccaaggatgttcgaccgcctgctcctgccaatttcgtcgtg |
39862881 |
T |
|
| Q |
316 |
ccggggaagagaccattatcatccatgtcaccaactattgttctcaaggttcttccacattgtagaataattttttatagcaatgattatgaaattctat |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39862880 |
ccggggaagagaccattatcatccatgtcaccaactattgttctcaaggttcttccacattatagaataattttttatagcaatgattatgaaattctat |
39862781 |
T |
|
| Q |
416 |
tatcatttgttgaagatattttgtaacatttgtgttactgcaggacagggaattgaaagcagtagtaggtgcaagtggaggaattatgattattgctgca |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39862780 |
tatcatttgttgaagatattttgtaacatttgtgttactgcaggacagggaattgaaagcagtagtaggtgcaagtggaggaattatgattattgctgca |
39862681 |
T |
|
| Q |
516 |
acttcagaggttcttttgaatcactttgtcaaaggaatggatcctttttcttctgtaactgctcctagggtctatcatcaggtatggaatcttacatttg |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39862680 |
acttcagaggttcttttgaatcactttgtcaaaggaatggatcctttttcttctgtaactgctcctagggtctatcatcaggtatggaatcttacatttg |
39862581 |
T |
|
| Q |
616 |
ttctggttgcata |
628 |
Q |
| |
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||||||||||||| |
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| T |
39862580 |
ttctggttgcata |
39862568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 96 - 368
Target Start/End: Complemental strand, 27114251 - 27113979
Alignment:
| Q |
96 |
gtggaatcagataaatgatcatggcacaagtcatttgagcataatagattttgagagaaatgctgtttccatgaccactacagtaaattcgtatttcggt |
195 |
Q |
| |
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|||||||||||| ||||||||||| |||| |||||| |||||||||||||| |||| |||||||||||| |||| ||| ||||| | | ||| || |
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| T |
27114251 |
gtggaatcagatcaatgatcatggtacaactcatttaagcataatagatttcgagaagaatgctgtttccttgacgtgtaccataaatgcattttttggc |
27114152 |
T |
|
| Q |
196 |
gcaacaatactttcaccaagtacaggaatagtactcaacaatgagatggatgatttttccatgcctataaaaaatgtttccaaggatgttcgaccgcctg |
295 |
Q |
| |
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||| | |||||||||||||| |||||| || | |||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||| || | |
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| T |
27114151 |
tcaaagttcctttcaccaagtactggaataatattgaacaatgagatggatgatttttccatgcctatgaaaaatgtgtccaaaaatgttccaccaccag |
27114052 |
T |
|
| Q |
296 |
ctcctgccaatttcgtcgtgccggggaagagaccattatcatccatgtcaccaactattgttctcaaggttct |
368 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
27114051 |
ctcctgccaacttcgtcgcgccagggaagagaccattatcatccatatcaccaactattgccctcaaggttct |
27113979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 469 - 611
Target Start/End: Complemental strand, 27113895 - 27113753
Alignment:
| Q |
469 |
tgaaagcagtagtaggtgcaagtggaggaattatgattattgctgcaacttcagaggttcttttgaatcactttgtcaaaggaatggatcctttttcttc |
568 |
Q |
| |
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|||||||| ||||||||||||||||||| || |||||| | | |||| | ||||||||| ||||||||||||||||||||||| | || |||||| | |
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| T |
27113895 |
tgaaagcaatagtaggtgcaagtggaggggctaacattattcccggaactgccgaggttcttatgaatcactttgtcaaaggaatgaagcccttttctgc |
27113796 |
T |
|
| Q |
569 |
tgtaactgctcctagggtctatcatcaggtatggaatcttaca |
611 |
Q |
| |
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|||| ||||| ||| ||||||||||||||| | |||||||| |
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| T |
27113795 |
tgtagtggctccaaggttctatcatcaggtatagtatcttaca |
27113753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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