View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17018_low_4 (Length: 632)
Name: NF17018_low_4
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_4 |
 | |
|
| [»] scaffold0238 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0238 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12589 - 12831
Alignment:
| Q |
1 |
gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
12589 |
gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatgttgattttgattgacaatttcgttggc |
12688 |
T |
|
| Q |
101 |
aatttgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12689 |
aatgtgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt |
12788 |
T |
|
| Q |
201 |
tgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12789 |
tgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
12831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 420 - 617
Target Start/End: Original strand, 12999 - 13196
Alignment:
| Q |
420 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12999 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaa |
13098 |
T |
|
| Q |
520 |
ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13099 |
ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
13196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12604343 - 12604113
Alignment:
| Q |
1 |
gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12604343 |
gtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgat------------tgacaatttcgttggc |
12604256 |
T |
|
| Q |
101 |
aatttgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12604255 |
aatttgaccgaccattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt |
12604156 |
T |
|
| Q |
201 |
tgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12604155 |
tgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
12604113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 420 - 617
Target Start/End: Complemental strand, 12603941 - 12603744
Alignment:
| Q |
420 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12603941 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaa |
12603842 |
T |
|
| Q |
520 |
ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12603841 |
ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcacttatctcctctattatatt |
12603744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 426 - 617
Target Start/End: Original strand, 23261698 - 23261892
Alignment:
| Q |
426 |
tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac |
525 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23261698 |
tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttataagtaaataattttcccacatatcttcttcagctccac |
23261797 |
T |
|
| Q |
526 |
gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
617 |
Q |
| |
|
|| |||||||||||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
23261798 |
gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaaaacggtcatttatctcctctattttatt |
23261892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 23261375 - 23261554
Alignment:
| Q |
7 |
acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||| | ||||| || |||||||| |
|
|
| T |
23261375 |
acataggtatgtaat----ttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttg |
23261463 |
T |
|
| Q |
107 |
accgacgattccatcatta--gttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatc |
189 |
Q |
| |
|
|| ||| ||||||| ||| |||||||||| || |||||||| | ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
23261464 |
actgacaattccatagttaattttatactattccaattcaattttgatttcagcttttgattcatttatactttagattttagattgcatc |
23261554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 10452753 - 10452995
Alignment:
| Q |
7 |
acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
10452753 |
acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatatcgattttgattgacaatttcgttggcaatttg |
10452852 |
T |
|
| Q |
107 |
accgacgattccatcattagttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10452853 |
actaacgattccatcattagttatactatttgaattttattttgattttggatttttattcatttctactttaggttttagattgcatcatgtgccatgt |
10452952 |
T |
|
| Q |
201 |
tgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
243 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10452953 |
tacaatggatgggaggatcaaggcttaaagctacgacagtgag |
10452995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 420 - 617
Target Start/End: Original strand, 10453163 - 10453360
Alignment:
| Q |
420 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10453163 |
cctctgtttgacaaccaaagaggaaaagattaatgtgtgccatgctcagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcag |
10453262 |
T |
|
| Q |
520 |
ctccacgcctctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
617 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10453263 |
ctccacgcctctcatttgcttctgtcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
10453360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 14455971 - 14455914
Alignment:
| Q |
25 |
tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttg |
82 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| |||| |||| ||||||| |
|
|
| T |
14455971 |
tttgttctttctcaatttcttactcaatttgttctttctcgatttaatatcgattttg |
14455914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 426 - 617
Target Start/End: Complemental strand, 56478249 - 56478055
Alignment:
| Q |
426 |
tttgacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccac |
525 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
56478249 |
tttgacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttttaagtaaattattttcccacatatcttcttcagctccac |
56478150 |
T |
|
| Q |
526 |
gcctctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctattatatt |
617 |
Q |
| |
|
|| |||||||||||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
56478149 |
gcttctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaatacggtcatttatctcctctattttatt |
56478055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 56478572 - 56478393
Alignment:
| Q |
7 |
acataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttg |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||| | ||||| || |||||||| |
|
|
| T |
56478572 |
acataggtatgtaat----ttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttg |
56478484 |
T |
|
| Q |
107 |
accgacgattccatcattagtt--atactatttgaatttgattttg------gattttgattcatttctactttaggttttagattgcatc |
189 |
Q |
| |
|
|| ||| ||||||| ||| || |||||||| |||| |||||| | ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
56478483 |
actgacaattccatagttaattttatactattccaattcaattttgatttcagcttttgattcatttatactttagtttttagattgcatc |
56478393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 6898231 - 6898166
Alignment:
| Q |
153 |
ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggat |
218 |
Q |
| |
|
|||||||| |||||||| || |||||||| | |||||||| ||||||||||| ||||||||||| |
|
|
| T |
6898231 |
ttttgatttgtttctactataagttttagaatccatcatgtagcatgttgcaattgatgggaggat |
6898166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 6898395 - 6898330
Alignment:
| Q |
29 |
ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc |
94 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
6898395 |
ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc |
6898330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 21547904 - 21547848
Alignment:
| Q |
29 |
ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgatt |
85 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||||||||| |||||||||| |
|
|
| T |
21547904 |
ttctttctcaatttcttattcagttttttctttctcaatttgatatcgattttgatt |
21547848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 33619317 - 33619228
Alignment:
| Q |
153 |
ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
243 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| || |||||||| |
|
|
| T |
33619317 |
ttttgatttgtttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag |
33619228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 39741937 - 39741872
Alignment:
| Q |
29 |
ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc |
94 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
39741937 |
ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc |
39741872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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