View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17018_low_6 (Length: 537)
Name: NF17018_low_6
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 47609048 - 47609559
Alignment:
| Q |
18 |
cataggccttcatacaacgagattaagagatatatagtgagtgtttggattagattttaagacacaaataccacgtcccaatgtaatttcaacatggaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
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|
| T |
47609048 |
cataggccttcatacaacgagattaagagatatatagtgagtgtttggattagattttaagacacaaatactacgtcccaatgcaatttcaatgtggaaa |
47609147 |
T |
|
| Q |
118 |
ctatgaagctacaaatacgagcttttgctttgatgtgaatttttaacgtgatttttcttgaagtgtcgcataaccaaacaagccaataattcggtcagtt |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
47609148 |
ctatgaagctacaaatacaagcttttgctttgatgtgaatttttaacgtgatttttcctgaagtgccgcataaccaaacaagccaataattcggtcagtt |
47609247 |
T |
|
| Q |
218 |
gctaaaagaaatagcatatcacgcagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactacataata |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47609248 |
gctaaaagaaatagcatatcacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactacataata |
47609347 |
T |
|
| Q |
318 |
ttgcaagcacattttgaatagaactgacccaaagctcaattatacagagaatttatcaaacaaaaattcaataaatgaggttataaatcacaagtaaaat |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47609348 |
ttgcaagcacattttgaatagaactaacccaaagctcaattatacagagaatttatcaaacaaaaattcaataaatgaggttataaatcacaagtaaaat |
47609447 |
T |
|
| Q |
418 |
atctgagaaaagcttagttcatctgtctttacttttccttaatgatgttaatagaagagtttaacaacttaaatgattttaattgttacctgatattcaa |
517 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
47609448 |
atccgagcaaagcttagttcatctgtctttacttttccttaatgatgttaatagaagagtttaacaacttaaatgattttcattgttaccttatattcaa |
47609547 |
T |
|
| Q |
518 |
ataagaataatc |
529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47609548 |
ataagaataatc |
47609559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 229 - 361
Target Start/End: Original strand, 47604761 - 47604893
Alignment:
| Q |
229 |
tagcatatcacgcagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactacataatattgcaagcaca |
328 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
47604761 |
tagcatataacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactaaataatattgcaagcaca |
47604860 |
T |
|
| Q |
329 |
ttttgaatagaactgacccaaagctcaattata |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47604861 |
ttttgaatagaactgacccaaagctcaattata |
47604893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 19112579 - 19112684
Alignment:
| Q |
97 |
aatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgatgtgaatttttaacgtgatttttcttgaagtgtcgcataaccaaac |
196 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||| | |
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|
| T |
19112579 |
aatgcaatttcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacgtgattttccttgatgtgccgcataaccaagc |
19112678 |
T |
|
| Q |
197 |
aagcca |
202 |
Q |
| |
|
|||||| |
|
|
| T |
19112679 |
aagcca |
19112684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 19991412 - 19991472
Alignment:
| Q |
247 |
aaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaa |
307 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
19991412 |
aaacaaaactaagaacaaagtcaagcatctttctagtaactcaaaaattcattatatgcaa |
19991472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 19930179 - 19930102
Alignment:
| Q |
365 |
agaatttatcaaacaaaaattcaataaatg-aggttataaatcaca--agtaaaatatctgagaaaagcttagttcat |
439 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||||||| |||| | |||||||||||| || |||| ||||||||| |
|
|
| T |
19930179 |
agaattaatcaaacaaaaactcaataaatgaaggttatatatcataagagtaaaatatcttagcaaagattagttcat |
19930102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 19155159 - 19155022
Alignment:
| Q |
53 |
agtgagtgtttggattagattttaagacacaaataccacgtcccaatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgatg |
152 |
Q |
| |
|
|||| |||||||||| || |||| ||| |||||||||| ||||| || ||||||||| ||||||||||||||||| || || |||||||||||||||| |
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|
| T |
19155159 |
agtgggtgtttggatcagtttttctgacgcaaataccacctcccattgcaatttcaacgtggaaactatgaagctataattataagcttttgctttgatg |
19155060 |
T |
|
| Q |
153 |
tgaatttttaacgtgatttttcttgaagtgtcgcataa |
190 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
19155059 |
tgaatttttaacgtaatttttcttgaaatgtcgcataa |
19155022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 36903756 - 36903636
Alignment:
| Q |
52 |
tagtgagtgtttggattagattttaagacacaaataccacgtcccaatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgat |
151 |
Q |
| |
|
|||||||||||| ||||| |||| || || |||||||| |||||||| ||||| || |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
36903756 |
tagtgagtgtttcgattaacttttgggatacgaataccacttcccaatgcaattttaatttggaaattatgaagctacaaatataagcttttgctttgat |
36903657 |
T |
|
| Q |
152 |
gtgaatttttaacgtgatttt |
172 |
Q |
| |
|
|||| ||| |||||||||||| |
|
|
| T |
36903656 |
gtgattttctaacgtgatttt |
36903636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 20909175 - 20909287
Alignment:
| Q |
55 |
tgagtgtttggattagattttaagacacaaataccacgtcccaatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgatgtg |
154 |
Q |
| |
|
||||||||||||| || ||| |||||||||||||| | |||||| ||||| ||| || ||| ||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
20909175 |
tgagtgtttggatcagcctttgcgacacaaataccactttccaatgcaattttaacttg-aaattatga-gctacaaatataagcttttcctttgatgtg |
20909272 |
T |
|
| Q |
155 |
aatttttaacgtgat |
169 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20909273 |
attttttaacgtgat |
20909287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 33765150 - 33765004
Alignment:
| Q |
54 |
gtgagtgtttggattagattttaagacacaaataccacgtcccaatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgatgt |
153 |
Q |
| |
|
||||| |||||||| || |||| |||| ||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33765150 |
gtgagcgtttggatcagcttttgggacataaataccacgtcccaatacaatttcaacgtgaaaactatgaagctacaaatctgagcttttgctttgatgt |
33765051 |
T |
|
| Q |
154 |
gaatttttaacgtgatttttcttgaagtgtcgcataaccaaacaagc |
200 |
Q |
| |
|
|||||||||| || ||||| ||||| || | ||||||||||||||| |
|
|
| T |
33765050 |
gaatttttaaagtaattttacttgacctgccacataaccaaacaagc |
33765004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 13876882 - 13876788
Alignment:
| Q |
78 |
gacacaaataccacgtcccaatgtaatttcaacatggaaactatgaagctacaaatacgagcttttgctttgatgtgaatttttaacgtgatttt |
172 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || |||||| ||||||| |||||||| |||||||||||| || ||| |||||||||||||||| |
|
|
| T |
13876882 |
gacacaaataccacttctcaatgcaattttaatttggaaattatgaagttacaaatataagcttttgcttttatatgattttttaacgtgatttt |
13876788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 4287698 - 4287778
Alignment:
| Q |
210 |
ggtcagttgctaaaagaaatagcatatcacgcagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaa |
292 |
Q |
| |
|
||||| ||||||||| ||||||||||| | | |||||| || |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
4287698 |
ggtcaattgctaaaacaaatagcatatgag--aaaggaaaacaacccaagaacaaagtcaaacatctctctagtaaatcaaaa |
4287778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 11016847 - 11016928
Alignment:
| Q |
106 |
tcaacatggaaactatgaagctacaaatacgagcttttgctttgatgtgaatttttaacgtgatttttcttgaagtgtcgca |
187 |
Q |
| |
|
||||| || ||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||| ||||||| |
|
|
| T |
11016847 |
tcaacttgaaaattatgaagctacaaatattagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgtcgca |
11016928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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