View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17018_low_8 (Length: 517)

Name: NF17018_low_8
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17018_low_8
NF17018_low_8
[»] chr5 (25 HSPs)
chr5 (167-503)||(31643884-31644219)
chr5 (16-168)||(31643344-31643499)
chr5 (167-309)||(31279489-31279631)
chr5 (176-291)||(40843336-40843451)
chr5 (176-309)||(31378651-31378784)
chr5 (176-303)||(31284668-31284795)
chr5 (167-301)||(31288439-31288573)
chr5 (176-290)||(31475954-31476068)
chr5 (176-309)||(31329869-31330002)
chr5 (194-286)||(31368540-31368632)
chr5 (167-291)||(31407417-31407541)
chr5 (179-286)||(31317326-31317433)
chr5 (179-286)||(31332167-31332274)
chr5 (167-309)||(31281378-31281520)
chr5 (195-309)||(31313191-31313305)
chr5 (195-309)||(31362944-31363058)
chr5 (179-286)||(31380952-31381059)
chr5 (87-137)||(31643460-31643510)
chr5 (196-289)||(31390862-31390955)
chr5 (196-284)||(31395729-31395817)
chr5 (197-288)||(31387834-31387925)
chr5 (178-231)||(31416561-31416614)
chr5 (209-278)||(31483653-31483722)
chr5 (178-231)||(31494138-31494191)
chr5 (175-231)||(31463031-31463087)
[»] chr3 (1 HSPs)
chr3 (197-279)||(25708412-25708494)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 167 - 503
Target Start/End: Original strand, 31643884 - 31644219
Alignment:
Q  167 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 266  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||    
T  31643884 taaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagccca 31643983  T
Q  267 caaatctccatacctttggctgcaagaaccatctccaaatttgaacaacaatggacgtcattttatctcaagtttgtaaaaattgatttcaccaatattg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  31643984 caaatctccatacctttggctgcaagaaccatctccaaatttgaacaacaatggacgtcattttgtttcaagtttgtaaaaattgatttcaccaatattg 31644083  T
Q  367 ggtgagaatgagagcaaccttttataattggagtgtgagatgctactgttactatctcgcacaaaggtctaacgatttttccaatgatttacgtggaaag 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  31644084 ggtgagaatgagagcaaccttttataattggagtgtgagatgctactgttactatctcgcacaaaggtctaacga-ttttccaatgagttacgtggaaag 31644182  T
Q  467 ttctaacctaaacccgtcaacgatggtcctacaacct 503  Q
    |||||||||||||||||||||||||||||||||||||    
T  31644183 ttctaacctaaacccgtcaacgatggtcctacaacct 31644219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 31643344 - 31643499
Alignment:
Q  16 agttgttcgcccatactactaccaatgtcggtactagccaactgcgatgaaggtgaatggaagtcaata---gttacggaatcttcatccgggagactag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  31643344 agttgttcgcccatactactaccaatgtcggtactagccaactgtgatgaaggtgaatggaagtcaataatagttacggaatcttcatccgggagactag 31643443  T
Q  113 tagtatgttcgttatctacgaaatcttcatccgagagactattagtatgttcgtta 168  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31643444 tagtatgttcgttatctacgaaatcttcatccgagagactagtagtatgttcgtta 31643499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 31279489 - 31279631
Alignment:
Q  167 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 266  Q
    ||||||||||||||||| | || ||| |||||||| |||||||||||||||||||| |||||||| || |  |||||||||| |  ||||||||| || |    
T  31279489 taaaggaaaatcttcaagaaattccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagccta 31279588  T
Q  267 caaatctccatacctttggctgcaagaaccatctccaaatttg 309  Q
    |||||||||| || ||||||||||  ||||||||||| |||||    
T  31279589 caaatctccacacttttggctgcatcaaccatctccatatttg 31279631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 40843336 - 40843451
Alignment:
Q  176 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 275  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||| |||||||| || |  |||||||||  |  ||||||||| |||||||||||||    
T  40843336 atcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagcagctgaagcaaatcccacaaatctcc 40843435  T
Q  276 atacctttggctgcaa 291  Q
    ||||||||| ||||||    
T  40843436 atacctttgtctgcaa 40843451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 31378784 - 31378651
Alignment:
Q  176 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 275  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || |||||||||| |  || |||||| |||| ||||||||    
T  31378784 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctcc 31378685  T
Q  276 atacctttggctgcaagaaccatctccaaatttg 309  Q
    | |||||||||||||  | |||||||||||||||    
T  31378684 acacctttggctgcatcatccatctccaaatttg 31378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 31284795 - 31284668
Alignment:
Q  176 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 275  Q
    ||||||| ||||| ||| |||||||| |||||||||||||||||||| |||||||| || || ||||||| |  | |||||||||| |||||||||||||    
T  31284795 atcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctcc 31284696  T
Q  276 atacctttggctgcaagaaccatctcca 303  Q
    | || ||||||||||  | |||||||||    
T  31284695 acacttttggctgcatcatccatctcca 31284668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 301
Target Start/End: Complemental strand, 31288573 - 31288439
Alignment:
Q  167 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 266  Q
    |||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||  ||| ||||  |||| |||||||||| |  ||||||||| || |    
T  31288573 taaaggaaaatcttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagccta 31288474  T
Q  267 caaatctccatacctttggctgcaagaaccatctc 301  Q
    |||||||||| || ||||||||||  |||||||||    
T  31288473 caaatctccacacttttggctgcatcaaccatctc 31288439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 31475954 - 31476068
Alignment:
Q  176 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 275  Q
    |||||||||| || ||| | ||||||||||||||| ||||||||||| |||||||| || || |||||||||  |  ||||||||| |||||||||||||    
T  31475954 atcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagcagctgaagcaaagcccacaaatctcc 31476053  T
Q  276 atacctttggctgca 290  Q
    ||||||||| |||||    
T  31476054 atacctttgtctgca 31476068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 31330002 - 31329869
Alignment:
Q  176 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 275  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || |||||||||| |  || || ||| |||| ||||||||    
T  31330002 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagaaaatcccagaaatctcc 31329903  T
Q  276 atacctttggctgcaagaaccatctccaaatttg 309  Q
    | |||||||||||||  | |||||||||||||||    
T  31329902 acacctttggctgcatcatccatctccaaatttg 31329869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 31368632 - 31368540
Alignment:
Q  194 tctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttggc 286  Q
    |||||||| |||||||| ||||||||||| | ||||||||| |  |||||||||| | |||||||||| |||||||||||||| |||||||||    
T  31368632 tctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggc 31368540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 31407417 - 31407541
Alignment:
Q  167 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 266  Q
    ||||| || |||||||||| || ||||| ||||||||||| ||||||||||| ||| |||||||| ||||| | |||||||  |  ||||||||| ||||    
T  31407417 taaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagcagctgaagcaaagccca 31407516  T
Q  267 caaatctccatacctttggctgcaa 291  Q
    |||||||||| || |||| ||||||    
T  31407517 caaatctccacacttttgtctgcaa 31407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 31317433 - 31317326
Alignment:
Q  179 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 278  Q
    ||||||| || ||| |||||||| |||||||| ||||||||||| |  |||||||| |  |||||||||| | |||||||||| |||||||||||||| |    
T  31317433 ttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccaca 31317334  T
Q  279 cctttggc 286  Q
    ||||||||    
T  31317333 cctttggc 31317326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 31332274 - 31332167
Alignment:
Q  179 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 278  Q
    ||||||| || ||| |||||||| || ||||||||||||||||| | |||||| || || |||||||||| | |||||||||| || ||||||||||| |    
T  31332274 ttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccaca 31332175  T
Q  279 cctttggc 286  Q
    ||||||||    
T  31332174 cctttggc 31332167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 31281520 - 31281378
Alignment:
Q  167 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 266  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| | |||||| || || ||||||| || |  ||||||||| || |    
T  31281520 taaaggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaagccta 31281421  T
Q  267 caaatctccatacctttggctgcaagaaccatctccaaatttg 309  Q
    |||| || || || || || ||||  ||||||||||| |||||    
T  31281420 caaacctgcacactttcgggtgcatcaaccatctccatatttg 31281378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 31313305 - 31313191
Alignment:
Q  195 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttggctgcaagaa 294  Q
    ||||||||||||||||||||||||| || ||||||| |||||| |||||| ||| |   | |||||| |||||||||||||| ||||||||| |||  |     
T  31313305 ctccaaatagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggcagcatcat 31313206  T
Q  295 ccatctccaaatttg 309  Q
     ||||||||||||||    
T  31313205 acatctccaaatttg 31313191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 31363058 - 31362944
Alignment:
Q  195 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttggctgcaagaa 294  Q
    ||||||| ||||||||||||||||| || ||||||| |||||| |||||| ||| |   | |||||| |||||||||||||| |||||||||||||  |     
T  31363058 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 31362959  T
Q  295 ccatctccaaatttg 309  Q
     ||||||||||||||    
T  31362958 acatctccaaatttg 31362944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 31381059 - 31380952
Alignment:
Q  179 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 278  Q
    ||||||| || ||| |||||||| || || |||||||||||||| | |||||| || || |||||||||| | |||||||||| || ||||||||||| |    
T  31381059 ttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccaca 31380960  T
Q  279 cctttggc 286  Q
    ||||||||    
T  31380959 cctttggc 31380952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 31643460 - 31643510
Alignment:
Q  87 tacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatc 137  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  31643460 tacgaaatcttcatccgagagactagtagtatgttcgttatgtacgaaatc 31643510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 31390862 - 31390955
Alignment:
Q  196 tccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttggctgc 289  Q
    ||||||||||| |||||||||||| || |||||||| ||||| |  |||| || | |||| | ||| | |||||||||||||||||||||||||    
T  31390862 tccaaatagatggttgaaggaagaacttagagcataacagaggaagccaataaaagatgatgtaaaactcacaaatctccatacctttggctgc 31390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 31395817 - 31395729
Alignment:
Q  196 tccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 284  Q
    |||||||||||  |||||||||||||| |||||||| || |  |||||||||| |  ||||||| | || |||||||||||||||||||    
T  31395817 tccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 31395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 31387834 - 31387925
Alignment:
Q  197 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttggctg 288  Q
    ||||||||||   |||||||||||||||||||||| || || |||||||||| | ||||| ||||   |||||||||||||| | |||||||    
T  31387834 ccaaatagatgagtgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctg 31387925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 31416561 - 31416614
Alignment:
Q  178 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 231  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31416561 cttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcata 31416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 31483722 - 31483653
Alignment:
Q  209 ttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 278  Q
    |||||||||||||| ||||| ||  |||||||||||| |||  ||||| |||| | ||||||||||||||    
T  31483722 ttgaaggaagagcttagagcgtaaaagagtagtccaataatggatgaaacaaaacacacaaatctccata 31483653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 31494138 - 31494191
Alignment:
Q  178 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 231  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31494138 cttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcata 31494191  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 31463031 - 31463087
Alignment:
Q  175 aatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 231  Q
    |||||||||||  | ||||| ||||||||||| ||||||||||||||| | ||||||    
T  31463031 aatcttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcata 31463087  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 25708494 - 25708412
Alignment:
Q  197 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatac 279  Q
    ||||| ||||| || || |||||||| |||||||| |||| |||||||||||||  ||||||||| || ||||||||||||||    
T  25708494 ccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatac 25708412  T

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