View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17019_high_1 (Length: 243)
Name: NF17019_high_1
Description: NF17019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17019_high_1 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 41307398 - 41307596
Alignment:
| Q |
48 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
147 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
41307398 |
tgttgctttcttctcctgtaacaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaa |
41307497 |
T |
|
| Q |
148 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||||| | ||||||| |
|
|
| T |
41307498 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactctt |
41307596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 8697297 - 8697495
Alignment:
| Q |
48 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
147 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
8697297 |
tgttgctttcttctcctataacaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaa |
8697396 |
T |
|
| Q |
148 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||||| | ||||||| |
|
|
| T |
8697397 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactctt |
8697495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 64 - 243
Target Start/End: Complemental strand, 9589308 - 9589126
Alignment:
| Q |
64 |
tgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaa |
163 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9589308 |
tgtagcaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacagtggctcttcatttaaatcaaacaatggttcttcatttaaa |
9589209 |
T |
|
| Q |
164 |
tcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||||| | ||||||| |
|
|
| T |
9589208 |
tcaaatggaaaagcattgagatccatagcaaaattttgttcttcatgaataatataaatttgataaatgagtacctaactctt |
9589126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 4236365 - 4236195
Alignment:
| Q |
73 |
gttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatgga |
172 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4236365 |
gttttcttcctcaccatttaaatcatgtagttcttgatttaaatcaaatagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaagcgga |
4236266 |
T |
|
| Q |
173 |
aaagcattgagatccatcgaaaaaatttgttctaaattaatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4236265 |
aaagcattgagatccacaacgaaattttgttctacattaatataaatttgataaattagtatctaactctt |
4236195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 38805839 - 38805651
Alignment:
| Q |
48 |
tgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaa |
147 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
38805839 |
tgttgctttcttctcctgtagcaaagttttcttcctcaccatttaaatcatgtagatcttgatttaaatcaaacaatggcttttcatttaaatcaaacaa |
38805740 |
T |
|
| Q |
148 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat---taatataaatttgataaatgagta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
38805739 |
tggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaatttttgttcttcatgaataatataaatttgataaatgagta |
38805651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 4227370 - 4227149
Alignment:
| Q |
10 |
atgactaatggactctccctagaaatccatcgtgtaactgttgttttcttcttgtgtagcaaagttttcttccttaccatttaaatcgtgtagttcttca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| | || || ||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
4227370 |
atgactaatggactctccctagaaatacatcgtgtgactgttgct------------agaaaggttttcttcctcaccatttaaatcatgtagttcttga |
4227283 |
T |
|
| Q |
110 |
tttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaatttgttctaaat |
209 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| || |
|
|
| T |
4227282 |
tttaaatcaaatagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaacagaaaagcattgagatccgcaacgaaattttgttctacat |
4227183 |
T |
|
| Q |
210 |
taatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4227182 |
taatataaatttgataaattagtatctaactctt |
4227149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 40932223 - 40932075
Alignment:
| Q |
98 |
tgtagttcttcatttgaatcaaacagcggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatcgaaaaaa |
197 |
Q |
| |
|
|||||||||| |||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
40932223 |
tgtagttcttgatttaaatccaacggtggctcttcatttaaatcaaacaatggttcttcatttaaatcaaatggaaaagcattgagatccatagcaaaat |
40932124 |
T |
|
| Q |
198 |
tttgttctaaat---taatataaatttgataaatgagtatcaaactctt |
243 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |||| | ||||||| |
|
|
| T |
40932123 |
tttgttcttcattaataatataaatttgataaataagtacctaactctt |
40932075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 4236416 - 4236375
Alignment:
| Q |
10 |
atgactaatggactctccctagaaatccatcgtgtaactgtt |
51 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
4236416 |
atgactaatggactctccctcgaaatctatcgtgtgactgtt |
4236375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 20543320 - 20543290
Alignment:
| Q |
10 |
atgactaatggactctccctagaaatccatc |
40 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20543320 |
atgactaatggactctccctagaaatccatc |
20543290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University