View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17019_high_2 (Length: 235)
Name: NF17019_high_2
Description: NF17019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17019_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 4236100 - 4235958
Alignment:
| Q |
3 |
actttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagttt-gaaaaaattgataactgaagtattatgtcattta |
101 |
Q |
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||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
4236100 |
actttggtggtaaacattttaagattagaatataactaagggagggaagtttttcaattgagtttaaaaaaaattgataactgaagcattatgccattta |
4236001 |
T |
|
| Q |
102 |
aataagtgaagttgaaaataaattaattagtactgatattacc |
144 |
Q |
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| T |
4236000 |
gataagtggagttgaaaaataattaattggtattggtattacc |
4235958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 4227056 - 4226928
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagttt-gaaaaaattgataactgaagtattatgtcattt |
100 |
Q |
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|||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
4227056 |
aactttggtggtaaacattttaagattagaatataactaagggagggaagtttttcaattgagtttaaaaaaaattgataactgaagcattatgccattt |
4226957 |
T |
|
| Q |
101 |
aaataagtgaagttgaaaataaattaatt |
129 |
Q |
| |
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| ||||||| ||||||||| |||||||| |
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|
| T |
4226956 |
agataagtggagttgaaaaagaattaatt |
4226928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 12094978 - 12094906
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
12094978 |
aactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgaatttaaaaaaa |
12094906 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 40932015 - 40931944
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40932015 |
aactttggtggtaaacattttaagattaaa-tataaataatggagggaagtttttcaattgattttaaaaaaa |
40931944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 38805561 - 38805512
Alignment:
| Q |
25 |
gattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
38805561 |
gattagagtataaattttggagggaagtttttcaattgagttttaaaaaa |
38805512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 38805623 - 38805591
Alignment:
| Q |
42 |
tggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
38805623 |
tggagggaagtttttcaattgagttttaaaaaa |
38805591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 8697555 - 8697627
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
8697555 |
aactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
8697627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10646988 - 10646916
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
10646988 |
aactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
10646916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 40486115 - 40486187
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
40486115 |
aactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
40486187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 41307656 - 41307728
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
41307656 |
aactttggtggtaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
41307728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 45278358 - 45278430
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
45278358 |
aactttggtgggaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
45278430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 3943456 - 3943384
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
3943456 |
aactttggtgggaaacattttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
3943384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 9589066 - 9588994
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
9589066 |
aactttggtggtaaacattttaagattaaagtataaattttggagggaagtttttcaattgagtttaaaaaaa |
9588994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 2911205 - 2911277
Alignment:
| Q |
2 |
aactttggcggtaaacattttaagattagagtataaataatggagggaagtttttcaattgagtttgaaaaaa |
74 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |
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| T |
2911205 |
aactttggtgggaaacattttaagattagagtataaattttggaggaaagtttttcaattgagtttaaaaaaa |
2911277 |
T |
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