View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_1 (Length: 806)
Name: NF1701_high_1
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 125 - 802
Target Start/End: Original strand, 3632194 - 3632871
Alignment:
| Q |
125 |
gttattgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatg |
224 |
Q |
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| T |
3632194 |
gttattgtatgagtggtaatatgattagtctcacatttttaaattctatttagtctttagtcaatgtaatctgtttttacatggatatagtacaataatg |
3632293 |
T |
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| Q |
225 |
ctaatggttcgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacatt |
324 |
Q |
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| T |
3632294 |
ctaatggtttgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaatttgattttcacccgttacatt |
3632393 |
T |
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| Q |
325 |
ttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcac |
424 |
Q |
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| T |
3632394 |
ttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttctttgaaacgaacaaggatttggcac |
3632493 |
T |
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| Q |
425 |
cttctccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggttacaggagttgccatttattcttatctggaagtgatag |
524 |
Q |
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| T |
3632494 |
cttctccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggatacaggagttgccatttattcttatctggaagtgatag |
3632593 |
T |
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| Q |
525 |
ttcatctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaatcatttttcaatc |
624 |
Q |
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| T |
3632594 |
ttcatctctcagtgttgctccatctcctggaaatgtaagttttattttctttcaactatcggattaaaatattgatattaaataaaatcatttttcaatc |
3632693 |
T |
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| Q |
625 |
acataaaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttgaatttatctttaat |
724 |
Q |
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| T |
3632694 |
acataaaaaagttcaagtgcaaccttgtaatgtcaatgtatgaaccagttataagattcactaaataatatcactggaaggttttgaatttatctttaat |
3632793 |
T |
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| Q |
725 |
aattggttaacacaatttatctactgcagccnnnnnnnccttttcgaatatgtttatcttcccatagtattatctacc |
802 |
Q |
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| T |
3632794 |
aattggttaacacaatttatctactgcagcctttttttccttttcgaatatgtttatcttcccatagtattatttacc |
3632871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 3632088 - 3632136
Alignment:
| Q |
19 |
aacctttggtttgtttccgagttttgtttgattctaaagctactgtcct |
67 |
Q |
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| T |
3632088 |
aacctttggtttgttttcgagttttgtttgattctaaagctactgtcct |
3632136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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