View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_10 (Length: 412)
Name: NF1701_high_10
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 38706215 - 38706547
Alignment:
| Q |
13 |
aatataaacaaaagagtcaaccagtcaaaccccaaactataagcttagttccatcttaatcctaaagtagtaatattaattaaatttactcaaactggtg |
112 |
Q |
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| T |
38706215 |
aatataaacaaaagagtcaaccagtcaaaccccaaactataagcttggttccatcttaatcctaaagtagtaatattaattaaatttactcaaactggtg |
38706314 |
T |
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| Q |
113 |
cattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctattcttatccgactcta |
212 |
Q |
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| T |
38706315 |
cattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctatccttatccgactcta |
38706414 |
T |
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| Q |
213 |
ttatnnnnnnnnnnnncacaataactccacatgcccccaataagtgaaaccatcaattaacaatcaaaatcttacacgtttcttcgtttctcatatatat |
312 |
Q |
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| T |
38706415 |
ttat----tatatatacacaataactccacatgcccccaataagtgaaaccatcaatta--aatcaaaatcttacacgtttcttcgtttctcatatatat |
38706508 |
T |
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| Q |
313 |
ttcatactgtttgttcttcctttcacaaaactaaatcac |
351 |
Q |
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| T |
38706509 |
ttcatactgtttgttcttcctttcacaaaactaaatcac |
38706547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 38706568 - 38706603
Alignment:
| Q |
359 |
attgagagctacacatacatgagaggtatggatatt |
394 |
Q |
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| T |
38706568 |
attgagagctacacatacatgagaggtatggatatt |
38706603 |
T |
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