View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_high_13 (Length: 375)
Name: NF1701_high_13
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Complemental strand, 39272930 - 39272582
Alignment:
| Q |
9 |
agcagagacagtggactatcgatatcttcatcaactccatcgaacgcattaatatccttaatccagtctggtttatcatcaagatccttccaaaccaacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272930 |
agcagagacagtggactatcgatatcttcatcaactccatcgaacgcattaatatccttaatccagtctggtttatcatcaagatccttccaaaccaacc |
39272831 |
T |
|
| Q |
109 |
tggagttcaacacaaacccagaccattcaagcttcctaggcagcacaggtgccctgtcacctatgtaaactgcccctctccttgcatattttaaggaatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39272830 |
tggagttcaacacaaacccagaccattcaagcttcctaggtagcacaggtgccctgtcacctatgtaaactgcacctctccttgcatattttaaggaatc |
39272731 |
T |
|
| Q |
209 |
atatgtatgcaacccaaccaaatgatttgtcgcgttacaagcaggaccttgtactggcattggcggcacctcctccttcagtgaggttgaagattcatcg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272730 |
atatgtatgcaacccaaccaaatgatttgtcgcgttacaagcaggaccttgtactggcattggcggcacctcctccttcagtgaggttgaagattcatcg |
39272631 |
T |
|
| Q |
309 |
gtatcagactgaacaagtattccaaccgaaactgctcctatccatttca |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272630 |
gtatcagactgaacaagtattccaaccgaaactgctcctatccatttca |
39272582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 5969280 - 5969416
Alignment:
| Q |
45 |
ccatcgaacgcattaatatccttaatccagtctggtttatcatcaagatccttccaaaccaacctggagttcaacacaaacccagaccattcaagcttcc |
144 |
Q |
| |
|
||||| || |||| || |||||||||||| ||||| ||||| |||| ||||||||| | || | ||| ||||||||||||||||||||||||| || |
|
|
| T |
5969280 |
ccatccaatgcatcaagatccttaatccattctggcttatcgtcaacatccttccacagtaatcgggaattcaacacaaacccagaccattcaaattttg |
5969379 |
T |
|
| Q |
145 |
taggcagcacaggtgccctgtcacctatgtaaactgc |
181 |
Q |
| |
|
| |||| ||||||||||| |||| | ||||||||||| |
|
|
| T |
5969380 |
tcggcaacacaggtgcccggtcatcaatgtaaactgc |
5969416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University