View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_15 (Length: 358)
Name: NF1701_high_15
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 12807514 - 12807688
Alignment:
| Q |
15 |
aataaaagaggttaacattagatttatatattttaccattaaaaactcaaccattaaaattatataagttaaattatatcggaggtccttcaagttattt |
114 |
Q |
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| T |
12807514 |
aataaaagaggttaacattagatttatatattttaccattaaaaactcaaccattaaaattatataggttaaattatatcggaggtcttttaagttattt |
12807613 |
T |
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| Q |
115 |
aattataacattcaagtcctttaagtattttttgtaggaccaaaatggtacataaaggacctaagtggtatgtaa |
189 |
Q |
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| T |
12807614 |
aattataacattcaggtcctttaagtattttttgtaggacctaaatggtacataaaggacctaagtggtatgtaa |
12807688 |
T |
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Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 187 - 346
Target Start/End: Original strand, 12807710 - 12807871
Alignment:
| Q |
187 |
taacaattaaataacttacaagatctatggtgtaatttagccaattatataccactgcttttattttggaataccactaacacaagtatggcacttgaaa |
286 |
Q |
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| T |
12807710 |
taacaattaaataacttaaaagatctctggtgtaatttagccaattatataccactgcttttattttggaataccactaacacaagtatggcacttgaaa |
12807809 |
T |
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| Q |
287 |
cccaaaactaattaga--nnnnnnnnnagtgcatacatttacaaattagtaacaactaatat |
346 |
Q |
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| T |
12807810 |
cccaaaactaattagatttttttttttagtgcatacatttacaaattagtaacaaataatat |
12807871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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