View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_high_2 (Length: 557)
Name: NF1701_high_2
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 5 - 539
Target Start/End: Original strand, 12698936 - 12699468
Alignment:
| Q |
5 |
ggtagattatactaagtagtggaactagctaatgatgtggcaaccctaccagaatgggagctacctcatttgtttgtcgtctatagaactcgcccttcga |
104 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12698936 |
ggtacattataataagtagtggaactagctaatgatgtggcaaccctaccagaatgtgagctacctcatttgtttgtcgtctatagaactcgcccttgga |
12699035 |
T |
|
| Q |
105 |
gtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgactatcttcgtaacatcaacctgagcttgatggaaagcatctatagtaactt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
12699036 |
gtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgactatctccgtaacatcaacctg--cctgatggaaagcatctatagtaactt |
12699133 |
T |
|
| Q |
205 |
tggaatcggatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcattgcataatataacgtcaacgcttcccccatgggcacatgccattt |
304 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12699134 |
tggaatcagatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcattgcataatataacgtcaacgcttcccccatgggtacatgacattt |
12699233 |
T |
|
| Q |
305 |
cagagatatgggaatagtttttgccaacacaaaagttccttccttgtcccggatacaagtgcatatacttgttcttttagttgatcaaagaaagatgcgt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699234 |
cagagatatgggaatagtttttgccaacacaaaagttccttcctcgtcacggatacaagtacatatacttgttcttttagttgatcaaagaaagatgcgt |
12699333 |
T |
|
| Q |
405 |
caacatttcatttaacatgacaacgccatggtggctgccaccgcaaaattgccttgtcaccaaattgaacctggactcagcatcatcttgatcagccgtg |
504 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
12699334 |
caacatttcatttaacacgacaacgccatggtggctgccaccgcaaaattgccttgtcaccaaattgaacctggagtcagcatcatcttgatcagcggtg |
12699433 |
T |
|
| Q |
505 |
tgaaccgaccataaaggtataattgtcagagcaac |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699434 |
tgaaccgaccataaaggtataattgtcagagcaac |
12699468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 30449524 - 30449751
Alignment:
| Q |
62 |
gagctacctcatttgtttgtcgtctatagaactcgcccttcgagtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgacta-tctt |
160 |
Q |
| |
|
||||||||||||||| |||| | ||| ||||| ||||||||||||| || ||||| || |||||| |||||||||| || | || |||| | ||| |
|
|
| T |
30449524 |
gagctacctcatttgcttgttgcatattaaactcaaccttcgagtttgtgaagtgtgatgtaaacaaacgtcgacacacagagattatgtgaccagtctc |
30449623 |
T |
|
| Q |
161 |
cgtaacatcaacctgagcttgatggaaagcatctatagtaactttggaatcggatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcatt |
260 |
Q |
| |
|
|||||| |||||| | | |||| ||||||||||||| |||||||||||| |||||||| ||||| || | |||||||||||| || || |||| || |
|
|
| T |
30449624 |
cgtaac-tcaacccgttcctgattgaaagcatctataataactttggaattagatgtgaagtccacattatcgaaggacatgtcacttaggcattccaaa |
30449722 |
T |
|
| Q |
261 |
gcataatataacgtcaacgcttcccccat |
289 |
Q |
| |
|
||||| |||||| ||| || |||||||| |
|
|
| T |
30449723 |
gcatagtataacaccaaggcatcccccat |
30449751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 8274774 - 8274741
Alignment:
| Q |
17 |
taagtagtggaactagctaatgatgtggcaaccc |
50 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
8274774 |
taagtagtggaactagctaataatgtggcaaccc |
8274741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University