View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_30 (Length: 250)
Name: NF1701_high_30
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 6024486 - 6024287
Alignment:
| Q |
42 |
ttatgaatagttcaattaatgtgcttatgaatataatgatgtggttaatgaacttcggttaaagaaaaatcgttggaaagaatcgaaacatagggaggg- |
140 |
Q |
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| T |
6024486 |
ttatgaatagttcaattaatgtgtttatgaatataatgatgtggttaatgaaattcagttaaagaaaaatcgctggaaagaatcgaaacatagggagggg |
6024387 |
T |
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| Q |
141 |
ttggaatatataattatatgtagtcggttgcatcatataatcggctgataatagaggatcaatgttgttgatacacaataggttcccttgttcccctatg |
240 |
Q |
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| T |
6024386 |
ttggaatatataattatatgtagtcggttgcatcatataatcggctgataatagaggatcaatgttgttgatacacaataggttcccttgttcccctatg |
6024287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 6024224 - 6024273
Alignment:
| Q |
161 |
tagtcggttgcatcatataatcggctgataatagaggatcaatgttgttg |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6024224 |
tagtcggttgcaccatataatcggctgataatagaggatcaatgttgttg |
6024273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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