View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_high_39 (Length: 232)
Name: NF1701_high_39
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 47815452 - 47815651
Alignment:
| Q |
14 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
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|
| T |
47815452 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagctccaaagtgtaaaactcatagg |
47815551 |
T |
|
| Q |
114 |
tttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47815552 |
tttggtggtgctaattctataattcagtcaaacttatttgttccatgttgtcaaaaaactattggccattttagtttggagtattgttacatacaaatat |
47815651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 33426661 - 33426462
Alignment:
| Q |
14 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaag |
113 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33426661 |
atgaagaagaagaagtaacaatttaaacttgttttatgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaag |
33426562 |
T |
|
| Q |
114 |
tttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33426561 |
tttggtggtgctaattctataatccaatcaaacttacttgttccatgctgtcaaaaaactattgaccattttagtttggagtattgatacatacaaatat |
33426462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 32248892 - 32249084
Alignment:
| Q |
21 |
agaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtg |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
32248892 |
agaagaagtaacgatttaaatttattttcttttaaatcaaattaaaattaattatatcataaaataaaagtcccaaagtgcaaaattcacaagtttggtg |
32248991 |
T |
|
| Q |
121 |
gtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
32248992 |
gtgctaattctataatccagtcaaacttacttgttccatgctatcaaaaaactattggtcattttaatttggagtattggtacatacaaatat |
32249084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 37504301 - 37504471
Alignment:
| Q |
30 |
aacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaatt |
129 |
Q |
| |
|
||||||| |||||| || ||| |||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37504301 |
aacgattgaaatttattatctattaaatcaaattaaaatgaattatatcataaaataaaagcctcaaagtgcaaaactcacaagtttggtggtgctaatt |
37504400 |
T |
|
| Q |
130 |
ctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattgg |
200 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
37504401 |
ctataatctactcaaacttacttgttccatgctgtcaaaaaactattcgtcattttaatttggagtattgg |
37504471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 28851312 - 28851125
Alignment:
| Q |
26 |
aagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
28851312 |
aagtaacgatttaaatttgttttctgttaaatcaaattaaaattgattatatcataaaataaaatctccaaagtgcaaaactcacaagtttggtggtgct |
28851213 |
T |
|
| Q |
126 |
aattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
28851212 |
aattctataatccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtctagagtattggtacatacaaatat |
28851125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 2170339 - 2170141
Alignment:
| Q |
14 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaag |
113 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2170339 |
atgaaggagaggaagtaacgatttaaatttgtttcctgttaaatcaaattaaaattaattatatcataaaataaaagttccaaagtgcaaaactcacaag |
2170240 |
T |
|
| Q |
114 |
tttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2170239 |
tttggtggtgctaattctataattcagtcaaacttacttgttgcatgctgtca-aaaactattgaccattttagttaggagtattggtacatacaaatat |
2170141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 39482673 - 39482857
Alignment:
| Q |
27 |
agtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgcta |
126 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
39482673 |
agtaacgatttaaatttgttttcttttaaatcgaattaaaattaattatatcataaaataaaagcctcaaagtgcaaaattcacaagtttgatggtgcta |
39482772 |
T |
|
| Q |
127 |
attctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaat |
211 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||| |||| ||||||| || |||||||| |
|
|
| T |
39482773 |
attctataatcgagtcaaacttacttgtttcatgctgtcaaaaaactattgaccattttaatttgaagtattgatatatacaaat |
39482857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 6843977 - 6844114
Alignment:
| Q |
69 |
taattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaa |
168 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||| ||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||| | |
|
|
| T |
6843977 |
taattatatcataaaataaaagtctcaaagtgcaaaattcacaagtttggtagtgctaaatctgcaatccagtcaaacttacttgttccatgctgtcaga |
6844076 |
T |
|
| Q |
169 |
aaactattggccattttagtttggagtattggtacata |
206 |
Q |
| |
|
|||||||||| || ||| ||||||||||| | |||||| |
|
|
| T |
6844077 |
aaactattggtcactttggtttggagtatcgatacata |
6844114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 10461037 - 10460845
Alignment:
| Q |
21 |
agaagaagtaacgatttaaattt-gttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10461037 |
agaagaagtaacgatttaaattttgttttcttttaaatcaaattaaa-ttaattatatcataaaataaaagccccaaagtgcaaaattcacaagtttggt |
10460939 |
T |
|
| Q |
120 |
ggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
10460938 |
ggtgctaattctataatccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtttggaatattgatacatacaaatat |
10460845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 11668675 - 11668502
Alignment:
| Q |
40 |
atttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaattctataattca |
139 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
11668675 |
atttgttttctgtttaatcaaattaaaattaattataccataaaataaaagccccaaaatgcaaaactcacaagtctggtggtgctaattctataatcca |
11668576 |
T |
|
| Q |
140 |
gtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11668575 |
gtcatacttacttgttctatgctgtcaaaaatctattggccattttaatttggagtattggtacatacaaatat |
11668502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 11659506 - 11659333
Alignment:
| Q |
40 |
atttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaattctataattca |
139 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11659506 |
atttgttttctgtttaatcaaattaaaattaattataccatacaataaaaaccccaaaatgcaaaactcacaagtttggtggtgctaattctataatcca |
11659407 |
T |
|
| Q |
140 |
gtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
11659406 |
gtcatacttacttgttccatgctgtcaaaaatctattgaccattttaatttggagtattggtacatacaaatat |
11659333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 31372102 - 31372300
Alignment:
| Q |
14 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaagtaaaattaattatatcataaaataaaagccccaaagtgtaaaactcacaag |
113 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
31372102 |
atgaaggagaagaagtaacaatttaaatttggtttttgttaaattaaatgaaaattaattatatcataaaataaaagcttcaaagtgaaaaattcacaaa |
31372201 |
T |
|
| Q |
114 |
tttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31372202 |
tttggtggtgctaattctataatcctatcaaacttacttgttccat-ctgttaaaaaactattggccattttagtttgaagtattggtacatacaaatat |
31372300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 4867909 - 4868046
Alignment:
| Q |
69 |
taattatatcataaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaa |
168 |
Q |
| |
|
|||||||||||||||||||||| | |||| || |||| ||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| |||||| | |
|
|
| T |
4867909 |
taattatatcataaaataaaagtctcaaaatgcaaaattcacaagtttggtggtgctaaatctacaatccagtcaaacttacttgttccatactgtcaga |
4868008 |
T |
|
| Q |
169 |
aaactattggccattttagtttggagtattggtacata |
206 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
4868009 |
aaactattggtcattttggtttggagtatcggtacata |
4868046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 18751532 - 18751639
Alignment:
| Q |
80 |
taaaataaaagccccaaagtgtaaaactcacaagtttggtggtgctaattctataattcagtcaaacttatttgttccatgctgtcaaaaaactattggc |
179 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18751532 |
taaaataaaagccccaaagtacaaaactcacaagtttggtggtgctaaatttacaatccagtcaaacttttttgttccatgctgtcaaaaaactattggc |
18751631 |
T |
|
| Q |
180 |
cattttag |
187 |
Q |
| |
|
|||||||| |
|
|
| T |
18751632 |
cattttag |
18751639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 53239181 - 53239132
Alignment:
| Q |
164 |
tcaaaaaactattggccattttagtttggagtattggtacatacaaatat |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53239181 |
tcaaaaaactattgaccattttagtttggagtattggtacatacaaatat |
53239132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 53239224 - 53239177
Alignment:
| Q |
14 |
atgaagaagaagaagtaacgatttaaatttgttttctgttaaatcaaa |
61 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53239224 |
atgaaggagaggaagtaatgatttaaatttgttttctgttaaatcaaa |
53239177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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