View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_48 (Length: 204)
Name: NF1701_high_48
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 17725819 - 17725685
Alignment:
| Q |
52 |
ttgatgttcttttcggttgagcatgcttcttggcttctgttgctcggtttggtttggtgcttctcctggtaggtggttacaaggctcctggtttattttt |
151 |
Q |
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| T |
17725819 |
ttgatgctcttttcggttgggcatgcttcttggcttctgttgctcggtttggtttggtgcttcgcctggtaggtggttacatggctcctggtttattttt |
17725720 |
T |
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| Q |
152 |
ctggttctttgcttgttgcagttctggtggttctt |
186 |
Q |
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| T |
17725719 |
ctggttctttgcttgttgcagttctggtggttctt |
17725685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 17698543 - 17698444
Alignment:
| Q |
70 |
gagcatgcttcttggcttctgttgctcggtttggtttggtgcttctcctggtaggtggttacaaggctcctggtttatttttctggttctttgcttgttg |
169 |
Q |
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| T |
17698543 |
gagcatgcttctggttttcttttgatcagtttggtttggggatacgcctggtagttggttacctggctcctggtttatttttctggttctttgcttgttg |
17698444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 17734694 - 17734650
Alignment:
| Q |
142 |
gtttatttttctggttctttgcttgttgcagttctggtggttctt |
186 |
Q |
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| T |
17734694 |
gtttatttttctggttgtttgcttgttgctgttctggtggttctt |
17734650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 17737433 - 17737389
Alignment:
| Q |
142 |
gtttatttttctggttctttgcttgttgcagttctggtggttctt |
186 |
Q |
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| T |
17737433 |
gtttatttttctggttcttttcttcttgcggttctggtggttctt |
17737389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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