View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_5 (Length: 476)
Name: NF1701_high_5
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Complemental strand, 3945893 - 3945448
Alignment:
| Q |
20 |
actcttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaaataccctccaccattgata |
119 |
Q |
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| T |
3945893 |
actcttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaaataccctccaccattgata |
3945794 |
T |
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| Q |
120 |
cttctatttcttcttctccttcttcaactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataatattagtcctatgttttatgg |
219 |
Q |
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| T |
3945793 |
cttctatttcttcttctccttc---aactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataatattagtcctatgttttatgg |
3945697 |
T |
|
| Q |
220 |
tttatcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatg |
319 |
Q |
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| T |
3945696 |
tttatcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatg |
3945597 |
T |
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| Q |
320 |
aatactattggattaggcttttcatccgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatct |
419 |
Q |
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| T |
3945596 |
aatactattggattaggcttttcatctgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatct |
3945497 |
T |
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| Q |
420 |
ttagttcttcttctgtaccaagtaatgcatcagttatgccctctctgct |
468 |
Q |
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| T |
3945496 |
ttagttcttcttctgtaccaagtaatgcatcagttatgccttctctgct |
3945448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 35202432 - 35202472
Alignment:
| Q |
23 |
cttagaaatgttcctgttggtggtggttacagaagaaacaa |
63 |
Q |
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| T |
35202432 |
cttagaaacgttcctgttggtggtggttgcagaaaaaacaa |
35202472 |
T |
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