View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_6 (Length: 460)
Name: NF1701_high_6
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 2964793 - 2964490
Alignment:
| Q |
13 |
aatatcacatgttttaaaaatttgtccctaaatgcttttgacattgttgtttggttaattttatcctttgttgcacttactttccctaaattttgtttac |
112 |
Q |
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| T |
2964793 |
aatatcacatgttataaaaatttgtccctaaattctattgacattgttgtttggttaattttatcctttgttgcacttactttccctaaattttgtttac |
2964694 |
T |
|
| Q |
113 |
aactctgcatgttccttttgaaaaaactctgcatgttcttgatgagtgttaaagatgccaataattctttggcgtaatattaagtgaggaactgtatttt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2964693 |
aactctgcatgttccttttgaaaaaactctgcatgttcttgatgagtgttaaagatggcaataattctttggcgtaatattaagtgaggaactgtatttt |
2964594 |
T |
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| Q |
213 |
atgatttactttggtgcctaagagaggaactgtagagcatggataaatttttggatagtatta--ccattt------tcatgctcattctcattaatcat |
304 |
Q |
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| T |
2964593 |
atgatttactttggtgcctaagagaggaacggtagagtatggataaatttttggatagtattaccccattttcatggtcatgctcattctcattaatcat |
2964494 |
T |
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| Q |
305 |
attt |
308 |
Q |
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|||| |
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| T |
2964493 |
attt |
2964490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 136 - 367
Target Start/End: Complemental strand, 2945346 - 2945119
Alignment:
| Q |
136 |
aaactctgcatgttcttgatgagtgttaaagatgccaataattctttggcgtaatatta---agtgaggaactgtattttatgatttactttggtgccta |
232 |
Q |
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| T |
2945346 |
aaactctgcatgttcttgatgagtgttaaagaggccaataattctttggcgtaatattattaagtgagtaactatattttatgatttactttggtgccta |
2945247 |
T |
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| Q |
233 |
agagaggaactgtagagcatggataaatttttggatagtattaccattttcatgctcattctcattaatcatattttatgcaagttactattaacattgt |
332 |
Q |
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|||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| |
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| T |
2945246 |
agagaggaaccgtagagtatggataaacttttgcatagtattaccattttcatgctcattctcattaataacattttaagcaag-------taacattgt |
2945154 |
T |
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| Q |
333 |
cattttcacgctttagacaagtaaagttgtcactt |
367 |
Q |
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| T |
2945153 |
cattttcactctttagacaagtaaagatgtcactt |
2945119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 2964492 - 2964384
Alignment:
| Q |
336 |
tttcacgctttagacaagtaaagttgtcacttcatttctctctcactccttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaag |
435 |
Q |
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| T |
2964492 |
tttcacgctttagacaagtaaagttgtcacttcatttctctctcactctttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaag |
2964393 |
T |
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| Q |
436 |
cttgtggat |
444 |
Q |
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||||||||| |
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| T |
2964392 |
cttgtggat |
2964384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 443
Target Start/End: Complemental strand, 2920140 - 2920040
Alignment:
| Q |
342 |
gctttagacaagtaaagttgtcacttcatttctctctcactccttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaagcttgtg |
441 |
Q |
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|||||| |||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||| |
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| T |
2920140 |
gctttaaacaaataaagttgtcatttcttttctctcttactccttgttatgatgtttctatccttttcca-atagaaaaaggattcatgccaagcttgtg |
2920042 |
T |
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| Q |
442 |
ga |
443 |
Q |
| |
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|| |
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| T |
2920041 |
ga |
2920040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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