View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_high_7 (Length: 449)
Name: NF1701_high_7
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 186 - 446
Target Start/End: Complemental strand, 26403527 - 26403268
Alignment:
| Q |
186 |
ttttatttccaccacacttagccctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaactataagtaa |
285 |
Q |
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| T |
26403527 |
ttttatttccacctcacttagccctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaa |
26403428 |
T |
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| Q |
286 |
cataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattgatgcggttctt |
385 |
Q |
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| T |
26403427 |
cataagtatacagtttgagcatcttaggatccattttttgtgttgcttggtca-caacactatcacttgtagttgcactaccaccattgatgctgttctt |
26403329 |
T |
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| Q |
386 |
cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
446 |
Q |
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| T |
26403328 |
cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
26403268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 26403679 - 26403558
Alignment:
| Q |
38 |
atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataa----atttattttaatctttgaattaaaagtttattaaatttatgat |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
26403679 |
atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataattaaatttattttaatctttgaattaaaagtttattaaatttattat |
26403580 |
T |
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| Q |
134 |
actagttttttcaggttttact |
155 |
Q |
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| T |
26403579 |
actagttttttcaggttttact |
26403558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
| Q |
266 |
ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta |
365 |
Q |
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|||||||||| ||||||| ||| |||||||| |||||||| |||| ||||||| |||||| ||||||| |||||||||| | || ||| || ||||||| |
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| T |
26395520 |
ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta |
26395421 |
T |
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| Q |
366 |
ccacca |
371 |
Q |
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|||||| |
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| T |
26395420 |
ccacca |
26395415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
| Q |
348 |
tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt |
432 |
Q |
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| T |
26402577 |
tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt |
26402493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34290903 - 34290940
Alignment:
| Q |
1 |
tctgttgagctgtttgca-cccctcagggtcgggcctg |
37 |
Q |
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| T |
34290903 |
tctgttgagctgtttgcaccccctcagggtcgggcctg |
34290940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7670764 - 7670728
Alignment:
| Q |
1 |
tctgttgagctgtttgcacccctcagggtcgggcctg |
37 |
Q |
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| T |
7670764 |
tctgttgagctgtttgcacccctcagggccgggcctg |
7670728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38352518 - 38352554
Alignment:
| Q |
1 |
tctgttgagctgtttgcacccctcagggtcgggcctg |
37 |
Q |
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| T |
38352518 |
tctgttgagctgtttgcacccctcagggccgggcctg |
38352554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2791003 - 2791044
Alignment:
| Q |
1 |
tctgttgagctgtttgca-cccctcagggtcgggcctgatca |
41 |
Q |
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| T |
2791003 |
tctgttgagctgtttgcaccccctcagagtcgggcctgatca |
2791044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19691934 - 19691896
Alignment:
| Q |
1 |
tctgttgagctgtttgca-cccctcagggtcgggcctga |
38 |
Q |
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| T |
19691934 |
tctgttgagctgtttgcaccccctcagggtcgggcctga |
19691896 |
T |
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