View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701_low_11 (Length: 405)

Name: NF1701_low_11
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701_low_11
NF1701_low_11
[»] chr7 (1 HSPs)
chr7 (16-398)||(2311361-2311743)
[»] chr4 (11 HSPs)
chr4 (39-163)||(30271223-30271347)
chr4 (39-163)||(30280842-30280966)
chr4 (39-163)||(30304290-30304414)
chr4 (36-143)||(30264349-30264456)
chr4 (36-143)||(30287732-30287839)
chr4 (31-145)||(30032299-30032413)
chr4 (39-145)||(30220274-30220380)
chr4 (31-145)||(30048545-30048659)
chr4 (31-145)||(30062886-30063000)
chr4 (31-145)||(30228684-30228798)
chr4 (273-392)||(30220508-30220627)
[»] scaffold0024 (2 HSPs)
scaffold0024 (40-130)||(79534-79624)
scaffold0024 (40-94)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 2311361 - 2311743
Alignment:
Q  16 caaaaaattcattaggcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311361 caaaaaattcattaggcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctga 2311460  T
Q  116 tgatccatctcttcctttgtcttttccttctcttaaaccatcaaaattagaaccttataataaaagtttttggagaaaattttcttggactatgtcttct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311461 tgatccatctcttcctttgtcttttccttctcttaaaccatcaaaattagaaccttataataaaagtttttggagaaaattttcttggactatgtcttct 2311560  T
Q  216 gtttttaatactgcctctgattttggatggagtgtattgaagagtagcattattgttgatgataaaactcctataagatctggagatgaaggagctgatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311561 gtttttaatactgcctctgattttggatggagtgtattgaagagtagcattattgttgatgataaaactcctataagatctggagatgaaggagctgatt 2311660  T
Q  316 ttcaacctatttctatttcaaatattgcattctctattgatcatatcaaagacatcaaatccaagcttggagtggtatgatat 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311661 ttcaacctatttctatttcaaatattgcattctctattgatcatatcaaagacatcaaatccaagcttggagtggtatgatat 2311743  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 30271347 - 30271223
Alignment:
Q  39 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 138  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30271347 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30271248  T
Q  139 ttccttctcttaaaccatcaaaatt 163  Q
    ||||||| |  ||||||||| ||||    
T  30271247 ttccttcacgcaaaccatcacaatt 30271223  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 30280842 - 30280966
Alignment:
Q  39 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 138  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30280842 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30280941  T
Q  139 ttccttctcttaaaccatcaaaatt 163  Q
    ||||||| |  ||||||||| ||||    
T  30280942 ttccttcacgcaaaccatcacaatt 30280966  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 30304414 - 30304290
Alignment:
Q  39 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 138  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | | |||||| || ||||||||||||||||    
T  30304414 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtctt 30304315  T
Q  139 ttccttctcttaaaccatcaaaatt 163  Q
    ||||||| |  ||||||||| ||||    
T  30304314 ttccttcacgcaaaccatcacaatt 30304290  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 30264456 - 30264349
Alignment:
Q  36 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 135  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30264456 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30264357  T
Q  136 cttttcct 143  Q
    ||||||||    
T  30264356 cttttcct 30264349  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 30287732 - 30287839
Alignment:
Q  36 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 135  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30287732 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30287831  T
Q  136 cttttcct 143  Q
    ||||||||    
T  30287832 cttttcct 30287839  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 30032413 - 30032299
Alignment:
Q  31 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 130  Q
    |||| ||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30032413 gcaccataatattcaaacttcatcatgcacttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30032314  T
Q  131 tttgtcttttccttc 145  Q
    ||| |||||||||||    
T  30032313 tttatcttttccttc 30032299  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 30220274 - 30220380
Alignment:
Q  39 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 138  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||| | ||||    
T  30220274 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatctt 30220373  T
Q  139 ttccttc 145  Q
    |||||||    
T  30220374 ttccttc 30220380  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 30048659 - 30048545
Alignment:
Q  31 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 130  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30048659 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30048560  T
Q  131 tttgtcttttccttc 145  Q
    | | |||||||||||    
T  30048559 tctatcttttccttc 30048545  T

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Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 30063000 - 30062886
Alignment:
Q  31 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 130  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30063000 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30062901  T
Q  131 tttgtcttttccttc 145  Q
    | | |||||||||||    
T  30062900 tctatcttttccttc 30062886  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 30228798 - 30228684
Alignment:
Q  31 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 130  Q
    |||| ||||||||||||||| | ||||||||||| |||||||| ||||| ||| |||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30228798 gcaccataatattcaaacttaatcatgcacttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30228699  T
Q  131 tttgtcttttccttc 145  Q
    | | |||||||||||    
T  30228698 tctatcttttccttc 30228684  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 30220508 - 30220627
Alignment:
Q  273 gatgataaaactcctataagatctggagatgaaggagctgattttcaacctatttctatttcaaatattgcattctctattgatcatatcaaagacatca 372  Q
    ||||| ||||| ||||||||||| ||| |||||||| |||| | ||| ||| || || | ||||| ||  |||| ||| ||||||| |||||||| ||||    
T  30220508 gatgacaaaacacctataagatcaggatatgaaggaactgaatctcagccttttactttgtcaaacatatcattatctcttgatcaaatcaaagagatca 30220607  T
Q  373 aatccaagcttggagtggta 392  Q
    |||| |||||||||||||||    
T  30220608 aatcaaagcttggagtggta 30220627  T

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Target: scaffold0024 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 79624 - 79534
Alignment:
Q  40 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 130  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| || || | |||||| | || ||||||||    
T  79624 tattcaaacttcatcatgcacttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

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Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 72560 - 72506
Alignment:
Q  40 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttct 94  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||    
T  72560 tattcaaacttcatcatgcacttggagatggttactctctaatgggagctcttct 72506  T

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