View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_14 (Length: 375)
Name: NF1701_low_14
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 55380791 - 55380422
Alignment:
| Q |
6 |
aactccacatgcattcaacaacttgtttccaattccattaacaaaaggcagctacttgccatttatttctgaatttcaggatttaggtgcacaggtatac |
105 |
Q |
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| T |
55380791 |
aactccacatgcattcaacaacttgtttccaattccattaacaaaaggcagctacttgccatttatttctgaatttcaggatttaggtgcacaggtatac |
55380692 |
T |
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| Q |
106 |
ttgttggagatagaacttggaattggtgtctttgttggaggtagaaccctcactaacttgctgccaataaataattctatatgtagtatagttcattggt |
205 |
Q |
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| T |
55380691 |
ttgttggagatagaacttggaattggtgtctttgttggaggtagaaccctcactaacttgctgccaataaataattctatatgtagtatagttcattggt |
55380592 |
T |
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| Q |
206 |
ttttcaagacatatttatatgttaagttctggttttgctgtgaatcgtttaaaaagttttgtatatcatcgttattatgttagtaataggtagttcattt |
305 |
Q |
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| T |
55380591 |
ttttcaagacatatttatatgttaagttctggttttgctgtgaattgtttaaaaagttttgtacatcatcgttattatgttagtaataggtagttcattt |
55380492 |
T |
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| Q |
306 |
tcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac |
375 |
Q |
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| T |
55380491 |
tcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac |
55380422 |
T |
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