View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_16 (Length: 343)
Name: NF1701_low_16
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 83 - 306
Target Start/End: Original strand, 19624022 - 19624245
Alignment:
| Q |
83 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgagataatgttggaatagtctaaatatttatagaggtacgaaggggacaaaa |
182 |
Q |
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| T |
19624022 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgagataatgttggaatagtctaactatttatagaggtacgaaggggacaaaa |
19624121 |
T |
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| Q |
183 |
cgtaaaagatatcatttagtcataattcacatatattttatattaaaattctaaatcaagttcctggtcaacaaatctaattctaattctaattttcata |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19624122 |
cgtaaaagatatcatttagtcataattcacatatattttatattaaaattctaaatcaagttcctggtcaacaaatctaattctaattctaatttccata |
19624221 |
T |
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| Q |
283 |
tatttttctcatcatgccgaccca |
306 |
Q |
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|||||||||||||||||||||||| |
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| T |
19624222 |
tatttttctcatcatgccgaccca |
19624245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 15337850 - 15338008
Alignment:
| Q |
83 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgagataatgttggaatagtctaaatatttatagaggtacgaaggggacaaaa |
182 |
Q |
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| T |
15337850 |
tcttcatcttattattggatgatgattacaaattattggatttggtatgaggtaatgttagaacgggctaactatttatagaggtaggaaacggagaaaa |
15337949 |
T |
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| Q |
183 |
cgtaaaagatatcatttagtcataattcacatatattttatattaaaattctaaatcaa |
241 |
Q |
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| T |
15337950 |
tgtaaaataaattatttagtcataatttccatatattttatattctaaatctaaatcaa |
15338008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 30569267 - 30569422
Alignment:
| Q |
85 |
ttcatcttattattggatgatgattactaattattgcatttggtatgagataatgttggaatagtctaaatatttatagaggtacgaaggggacaaaacg |
184 |
Q |
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| T |
30569267 |
ttcatcttattattggatgatgattacaaattattgaatttggtatgaggtaatgttagaactg-gtatatatttatagaggtaggaaagggagaaaata |
30569365 |
T |
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| Q |
185 |
taaaagatatcatttagtcataattcacatatattttatattaaaattctaaatcaa |
241 |
Q |
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| T |
30569366 |
taaaataaatcattcggtcataattcccatatattttatattctaaatctaaatcaa |
30569422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 19144473 - 19144607
Alignment:
| Q |
83 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgagataatgttggaatagtctaaatatttatagagg--tacgaaggggacaa |
180 |
Q |
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| T |
19144473 |
tcttcatcttattattggatgatgaatacaattttttagagttg-tatgaggtaatgttgaaattggctaactatttatggagaattagaaaggggataa |
19144571 |
T |
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| Q |
181 |
aacgtaaaagatatcatttagtcataattcacatat |
216 |
Q |
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| T |
19144572 |
aatgtaaaagatgtcatttagtcataattgacatat |
19144607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 19623953 - 19623989
Alignment:
| Q |
14 |
agaaatcattgagagaagcatgtgaaatagtgataga |
50 |
Q |
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| T |
19623953 |
agaaatcattgagagaagcatgtgaaatagtgataga |
19623989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 7270626 - 7270576
Alignment:
| Q |
83 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgag |
133 |
Q |
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| T |
7270626 |
tcttcatcttattattggatgatgattattgattattgaacttggtatgag |
7270576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 7282587 - 7282537
Alignment:
| Q |
83 |
tcttcatcttattattggatgatgattactaattattgcatttggtatgag |
133 |
Q |
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||||||||||||||||||||||||||| | ||||||| | |||||||||| |
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| T |
7282587 |
tcttcatcttattattggatgatgatttttgattattgaacttggtatgag |
7282537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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