View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_low_18 (Length: 325)
Name: NF1701_low_18
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 31301841 - 31302139
Alignment:
| Q |
16 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31301841 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
31301940 |
T |
|
| Q |
116 |
ctattctcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtcc |
215 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31301941 |
ctattttcttccatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctgacacaaattctggaaccacagtcc |
31302040 |
T |
|
| Q |
216 |
ttccttcaagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttcat |
314 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31302041 |
ttccttcaagcatacttacgactgaggacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcatcaccatagcttcat |
31302139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 31312334 - 31312630
Alignment:
| Q |
16 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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|
| T |
31312334 |
atcaaggtggacgggataaaggtctacagctgatgaagacgtagcagtccatggcccatcaattgttaaactctgactttccgtttgtgaattacttgta |
31312433 |
T |
|
| Q |
116 |
ctattctcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtcc |
215 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
31312434 |
ttatttgcgtcaatctgatagtaatactgcctcattactttcatcttcttttcatccattacttcacttgaatctggcacaaattctggaaccacatttc |
31312533 |
T |
|
| Q |
216 |
ttccttcaagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
||||||||||||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
31312534 |
ttccttcaagcatacttaccacggacgacatagatgtcctaaagtttgaagtgacgttggtgcataggagagccacattcatcatcaccatggcttc |
31312630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 31250370 - 31250666
Alignment:
| Q |
16 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
115 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||| |
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|
| T |
31250370 |
atcaaggcggacaggataaaggtccgcagctgatgaagatgaagcagtccatggcccatcagttaataaactttgagtttgtgtttgtgatttacttgtc |
31250469 |
T |
|
| Q |
116 |
ctattctcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtcc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| | |||||| || || ||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
31250470 |
ttattttcttcaatctgatagtaatactgtctcattgcttccaactttttctcatccattacttcacttgaatctgaaacaaattctggaaccacggtat |
31250569 |
T |
|
| Q |
216 |
ttccttcaagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
31250570 |
ttccttcaagcatacttaccacggacgacatcgatggcctaaggtttgaagtgaggttggtgcataggagagcaacattgatcatcaccatagcttc |
31250666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 31352366 - 31352646
Alignment:
| Q |
29 |
ggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgtactattctcttcaa |
128 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||| || | | || ||||| | |
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|
| T |
31352366 |
ggataaaggtctgcagctgatgaaggtgaagcagtccat---ccatcacttaataaactctgactttgtgtttgtgacttgctcatcgttttgtcttcga |
31352462 |
T |
|
| Q |
129 |
tctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtccttccttcaagcat |
228 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| || || |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
31352463 |
tctgatagtaatactgtctcatttcttccatcttattgccatccattactttacttgaatctggcacaaattctggaaccacggttcttccttcaagcat |
31352562 |
T |
|
| Q |
229 |
acttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
31352563 |
acttacaactgacgacatagagggcctaaggtttgaagtgacattggtgcataggagagccacattgatcatcaccatggcttc |
31352646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 31241452 - 31241748
Alignment:
| Q |
16 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
115 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||| |||||| | |
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|
| T |
31241452 |
atcaaggtggacaggataaagatctctagctgatgaagatgaagcagtccattgcccatcagttaataaattctgactttgtgtttgtgttttacttatc |
31241551 |
T |
|
| Q |
116 |
ctattctcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtcc |
215 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||| | |||||| || || ||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
31241552 |
ttattttcttcaatctgataataatactttctcattgcttccaactttttctcatccattacttcacttgaatctgaaacaaattctggaaccacggtat |
31241651 |
T |
|
| Q |
216 |
ttccttcaagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
31241652 |
ttccttcaagcatacttacaaccgacgacatggggggcctaaggtttgaagtgacgttggtacataggagagccacgttgatcatcaccatagcttc |
31241748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 31381129 - 31381419
Alignment:
| Q |
16 |
atcaaggtggacgggataaaggtctacagctgatgaagatgtagcagtccatggcccatcaattaataaactctgactttgtgtttgtgacttacttgta |
115 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||| |||||| ||| | ||||| || |||||||| ||||||||| |||||| | |
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|
| T |
31381129 |
atcaagttggaccggataaaggtctacagctgacgaagatgaagcagtacattgatcatcacttgataaactccgactttgtg------acttacatacc |
31381222 |
T |
|
| Q |
116 |
ctattctcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtcc |
215 |
Q |
| |
|
|||| | ||| || ||| ||||||||||||||| |||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31381223 |
ttatttttttccatttgagagtaatactgcctcattacttcaagtttctgttcatccattacttcacttgaatctgaaacaaattctggaaccacagtcc |
31381322 |
T |
|
| Q |
216 |
ttccttcaagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
31381323 |
ttccttcaagcatacttaccactgatgacatagacggcctaaggtttgaagtgtcattggtgcataggagagccacatttatcatcaccatagcttc |
31381419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 31370560 - 31370750
Alignment:
| Q |
122 |
tcttcaatctgatagtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtccttcctt |
221 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||||| |||| || ||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
31370560 |
tcttccatctgagagtaatactgcctcattacttccaacttctgtttatccattacttcatttgaatctgaaacaaattctggaacaacagtccttcctt |
31370659 |
T |
|
| Q |
222 |
caagcatacttacgattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
||||||||||||| | |||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
31370660 |
caagcatacttacaacggacgacattgaaggcctaaggtttgaagtgacattggtacataggagagccacattgatcatcaccatggcttc |
31370750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 31287377 - 31287554
Alignment:
| Q |
135 |
agtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtccttccttcaagcatacttac |
234 |
Q |
| |
|
|||||||||| |||| | ||| || |||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31287377 |
agtaatactgactcatttcttgcaacttcttttcatccatcacttcatttgattctgaaacaaattctggaaccacagtccttccttcaagcatacttac |
31287476 |
T |
|
| Q |
235 |
gattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
31287477 |
cactgaagacataggcggcctaaggtttgaagtgtcattggtgcataggagacccacattgatcatcaccatggcttc |
31287554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 31277873 - 31278050
Alignment:
| Q |
135 |
agtaatactgcctcaatacttccatgttcttttcatccattacttcacttgaatctggcacaaattctggaaccacagtccttccttcaagcatacttac |
234 |
Q |
| |
|
||||||||||||||| || ||||| |||| ||||||||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31277873 |
agtaatactgcctcattatttccaacttctgttcatccatcacttctcttgaatatgaaacaaattctggaaccacagtcattccttcaagcatacttac |
31277972 |
T |
|
| Q |
235 |
gattgacgacatagggggcctaaggtttgaagtgacgttggtgcataggagagccacattgatcataaccatagcttc |
312 |
Q |
| |
|
| ||| ||||||| |||||||||||||||||| | |||| |||||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
31277973 |
cactgaagacatagacggcctaaggtttgaagtgtcattggcgcataggagagcgacatttatcatcaccatggcttc |
31278050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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