View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701_low_24 (Length: 299)

Name: NF1701_low_24
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701_low_24
NF1701_low_24
[»] chr2 (1 HSPs)
chr2 (1-291)||(27576974-27577264)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 27577264 - 27576974
Alignment:
Q  1 agcccctttcaccccatcctccctcacctccacattgccatccttaatggtctcaataggtgagcgatctcgatcaaagcatgcataattagtccaaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27577264 agcccctttcaccccatcctccctcacctccacattgccatccttaatggtctcaataggagagcgatctcgatcaaagcatgcataattagtccaaact 27577165  T
Q  101 cgatattgcccaagccgaatattatttaaagctaccaacaatttatttttatccctcacatcacataaacgaacaaaaccaaaaaatttccatctaacat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27577164 cgatattgcctaagccgaatattatttaaagctaccaacaatttatttttatccctcacatcacataaaagaacaaaaccaaaaaatttccatctaacat 27577065  T
Q  201 ttctttcgtggacatgtaaaagtccgacaaaataccacatacctcaaaaccattcttcaactccatgtaaggtagtctatctagaataatc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27577064 ttctttcgtggacatgtaaaagtccgacaaaataccacatacctcaaaaccattcttcaactccatgtaaggtagtctatctagaataatc 27576974  T

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