View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701_low_27 (Length: 260)

Name: NF1701_low_27
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701_low_27
NF1701_low_27
[»] chr1 (2 HSPs)
chr1 (151-247)||(6075378-6075475)
chr1 (90-152)||(6075257-6075320)
[»] chr7 (2 HSPs)
chr7 (151-247)||(27394555-27394650)
chr7 (90-154)||(27394694-27394759)
[»] chr6 (1 HSPs)
chr6 (90-137)||(22501353-22501400)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 6075378 - 6075475
Alignment:
Q  151 aacatagatctattttctacataataaa-tggcttcatctttagtatcatttttacaaaaatatacctaaactacgtggatcttcccgtactaaattc 247  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6075378 aacatagatctattttctacaaaaaaaaatggcttcatctttagtaccatttttacaaaaatatacctaaactacgtggatcttcccgtactaaattc 6075475  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 6075257 - 6075320
Alignment:
Q  90 gccttcgattccagtcttataatcattaacttcaccaactcatcataa-tgtcttttaaacaaa 152  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  6075257 gccttcgattccaatcttataatcattaacttcaccaactcataataactgtcttttaaacaaa 6075320  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 27394650 - 27394555
Alignment:
Q  151 aacatagatctattttctacataataaatggcttcatctttagtatcatttttacaaaaatatacctaaactacgtggatcttcccgtactaaattc 247  Q
    |||||| |||||||||||||| || |||||| |||||||| | || ||||| |||||||||||||||||||||| | |||||||| |||||||||||    
T  27394650 aacatatatctattttctacaaaa-aaatggtttcatcttcaataccatttctacaaaaatatacctaaactacatagatcttcctgtactaaattc 27394555  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 27394759 - 27394694
Alignment:
Q  90 gccttcgattccagtcttataatcattaacttcaccaactcatcataa-tgtcttttaaacaaaca 154  Q
    |||||||||||||  |||||||||| ||||||||| |||||||||||| ||||| ||||| |||||    
T  27394759 gccttcgattccaaccttataatcactaacttcacaaactcatcataactgtctattaaataaaca 27394694  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 22501353 - 22501400
Alignment:
Q  90 gccttcgattccagtcttataatcattaacttcaccaactcatcataa 137  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||    
T  22501353 gcctttgattccaaccttataatcattaacttcaccaactcatcataa 22501400  T

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