View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_28 (Length: 257)
Name: NF1701_low_28
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_28 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12699738 - 12699942
Alignment:
| Q |
1 |
gagaaatacttgaagggaaagaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtg |
100 |
Q |
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| T |
12699738 |
gagaaatacttgaagggaaagaactttggagaaggttttcacaccagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtg |
12699837 |
T |
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| Q |
101 |
gaact-aatgactgagggaaaagataaacgcgatgacaatttcgtaatattagtgctctttacaacaaacattgttcacatcagtgaatacagtcagccg |
199 |
Q |
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| T |
12699838 |
gaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatattagtgctctttacaacaaacattgttcacatcagtgaatacagtcagccg |
12699937 |
T |
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| Q |
200 |
aaggg |
204 |
Q |
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||||| |
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| T |
12699938 |
aaggg |
12699942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 2598768 - 2598668
Alignment:
| Q |
21 |
gaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaa |
120 |
Q |
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| T |
2598768 |
gaactttgatgaagttgttcccatcagttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaa |
2598669 |
T |
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| Q |
121 |
a |
121 |
Q |
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| T |
2598668 |
a |
2598668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 5049 - 5199
Alignment:
| Q |
4 |
aaatacttgaagggaaaga-actttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtgga |
102 |
Q |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaagaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtgga |
5148 |
T |
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| Q |
103 |
actaatgactgagggaaaagataaacgcgatgacaatttcgtaatattagt |
153 |
Q |
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| T |
5149 |
actaatgcatgaggggaaacataaacgcggtggcaattttgtaatattagt |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 9809556 - 9809427
Alignment:
| Q |
24 |
ctttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaaaga |
123 |
Q |
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||||||| |||||||| || |||| ||| |||||| || || |||| |||||| | | |||||| |||| |||||||||||| |||||| ||| | |
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| T |
9809556 |
ctttggacaaggttttgacttcaggtgaagaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaaca |
9809457 |
T |
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| Q |
124 |
taaacgcgatgacaatttcgtaatattagt |
153 |
Q |
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|||||||| || |||||||||||||||||| |
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| T |
9809456 |
taaacgcggtggcaatttcgtaatattagt |
9809427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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