View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_30 (Length: 256)
Name: NF1701_low_30
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 33699571 - 33699334
Alignment:
| Q |
9 |
agcaataggaaatccatgatggagacaaaaacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacac |
108 |
Q |
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| T |
33699571 |
agcaataggaaatccatgatggagacaaaaacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacac |
33699472 |
T |
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| Q |
109 |
ttgctgtagtatcttgagctgcaaatagtactccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaa |
208 |
Q |
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| T |
33699471 |
ttgctgtagtatcttgagctgcaaatagtactccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaa |
33699372 |
T |
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| Q |
209 |
atggcctaatagatccttctcattcaatctctgctcct |
246 |
Q |
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| T |
33699371 |
atggcctaatagatccttctcattcaatctttgctcct |
33699334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 33658856 - 33658648
Alignment:
| Q |
38 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttgagctgcaaatagt |
137 |
Q |
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| T |
33658856 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttgagctgcaaatagt |
33658757 |
T |
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| Q |
138 |
actccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaaatggcctaatagatccttctcattcaatc |
237 |
Q |
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| T |
33658756 |
actccaatcacattatcagcaatttcttcatctgttagagtttgtccattttcatccttgtagtttaagaagttgcctaatagattcttctcaatcaatc |
33658657 |
T |
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| Q |
238 |
tctgctcct |
246 |
Q |
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||||||||| |
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| T |
33658656 |
tctgctcct |
33658648 |
T |
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