View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_low_32 (Length: 248)
Name: NF1701_low_32
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_32 |
 | |
|
| [»] scaffold1301 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1301 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 406 - 613
Alignment:
| Q |
18 |
acatgtacgctaacagcatcatcattaggtacaacttcaaaactgagcagctctgtctggagcttttccaaatgtgaattgtgaagcttcatcctcctgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| | ||| ||| ||| || |||||| |
|
|
| T |
406 |
acatgtacgctaacagcatcatcattaggtacaacttcaaaattgagcagttctgtctggagcttttccaagagtggaatgtcaagattcgtcttcctgt |
505 |
T |
|
| Q |
118 |
agttgttcacgaacacgctagaaacaatcttgtttaagaacacttttacacaagttgagagggctgtttctgacacaaaactcttgattacttgttttgt |
217 |
Q |
| |
|
|| ||| || |||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
506 |
aggtgtccatgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagagggctgtttctgacacaaaactctccattacttgctttgt |
605 |
T |
|
| Q |
218 |
ttgtttgt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
606 |
ttgtttgt |
613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 17311151 - 17310953
Alignment:
| Q |
27 |
ctaacagcatcatcattaggtacaacttcaaaactgagcagctctgtctggagcttttccaaatgtgaattgtgaagcttcatcctcctgtagttgttca |
126 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| |||||||| | ||| | ||||||| ||||||||||||||| || |
|
|
| T |
17311151 |
ctaacagcatcatcgttaactacaacttcaaaactgagcagttctgtcttgagattttccaagagcgaaacatcaagcttcgtcctcctgtagttgtcca |
17311052 |
T |
|
| Q |
127 |
cgaacacgctagaaacaatcttgtttaagaacacttttacacaagttgagagggctgtttctgacacaaaactcttgattacttgttttgtttgtttgt |
225 |
Q |
| |
|
||||| | |||||||||||||||||||| | ||||| || |||||||||||| ||||||| |||||| || | |||||||| ||||||||||||| |
|
|
| T |
17311051 |
cgaactcactagaaacaatcttgtttaacatgactttgacgcaagttgagaggagtgtttctaacacaataccttccattacttgctttgtttgtttgt |
17310953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University