View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_low_33 (Length: 247)
Name: NF1701_low_33
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 8567328 - 8567108
Alignment:
| Q |
19 |
gatcatacccatagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagtgtttagttagatgttttcaaatatttgagagtttgat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8567328 |
gatcaaacccatagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagtgtttagttagatgttttcaaatatttgagagtttgat |
8567229 |
T |
|
| Q |
119 |
gattgatttctttagaaaatttgtaatttaataagagatgtcttgaaattgtcgagtttatcacaacaaagaacaatccaaatctcaatcctttcaattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8567228 |
gattgatttctttagaaaatttgtaatttaataaaagatgtcttgaaattgtcgagtttatcacaacaaagaacaatccaaatctcaatcctttcaattg |
8567129 |
T |
|
| Q |
219 |
ttatgggaattcaagtataat |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8567128 |
ttatgggaattcaagtataat |
8567108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University