View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1701_low_35 (Length: 238)
Name: NF1701_low_35
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29718599 - 29718378
Alignment:
| Q |
1 |
cacgcaattgaattgcataaaagccaacgcatatagcaataagcataaagactggaaggacaacaaaacaaaatttaatgccaataatgatggaaaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29718599 |
cacgcaattgaattgcataaaagccaacgcatatagcaataagcataaagagtggaaggacaacaaaacaaaatttaatgccaataatgatggaaagtat |
29718500 |
T |
|
| Q |
101 |
attgaatagagcttggaggagaaagcaggtgccacattgaagcagaccggcacacagaatcgcgcttattccaagcacggagcagcttctaaccttgttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29718499 |
attgaatagagcttggaggagaaagcaggtgccacattgaagcagactggcacacagaatcgcgcttattccaaacacggagcagcttctaaccttgttc |
29718400 |
T |
|
| Q |
201 |
gtgtagttgtgcatgatcaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29718399 |
gtgtagttgtgcatgatcaatc |
29718378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University