View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701_low_36 (Length: 237)

Name: NF1701_low_36
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701_low_36
NF1701_low_36
[»] chr2 (1 HSPs)
chr2 (16-223)||(42206160-42206367)
[»] chr7 (4 HSPs)
chr7 (24-101)||(2685939-2686016)
chr7 (27-100)||(8235078-8235151)
chr7 (24-104)||(8227554-8227634)
chr7 (27-99)||(23681857-23681929)
[»] chr4 (3 HSPs)
chr4 (24-99)||(21001329-21001404)
chr4 (24-101)||(18910021-18910098)
chr4 (59-102)||(39992134-39992177)
[»] chr6 (1 HSPs)
chr6 (24-93)||(13587676-13587745)
[»] chr5 (2 HSPs)
chr5 (62-99)||(6061452-6061489)
chr5 (62-99)||(6058546-6058583)
[»] chr3 (2 HSPs)
chr3 (66-100)||(36418200-36418234)
chr3 (22-99)||(45466467-45466544)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 42206160 - 42206367
Alignment:
Q  16 aatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccatataacccttat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206160 aatacgaagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccatataacccttat 42206259  T
Q  116 ttagattttgggtataatagttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaattggtaaccaatgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206260 ttagattttgggtataatagttatattttgttaactttgaaggtttagttcctctgatgagtgatagtacgttctgctcctccaattggtaaccaatgat 42206359  T
Q  216 attctgtg 223  Q
    ||||||||    
T  42206360 attctgtg 42206367  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 2686016 - 2685939
Alignment:
Q  24 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 101  Q
    ||||||||||||||| ||| |||||||||||||| |  ||| | |||||||||||||||||||||  ||| |||||||    
T  2686016 gagatttaatgatctgatggtgaaaaacaaatttatagatgattcaatactaatttgtttgtgcacgttaaacaaaac 2685939  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 8235078 - 8235151
Alignment:
Q  27 atttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaa 100  Q
    |||||||||||||||| ||||||| || |||||| |||||||||| |||||||| || || | |||||||||||    
T  8235078 atttaatgatctaatggtgaaaaataagtttgtgtatggtacaattctaatttgcttttgtacattagacaaaa 8235151  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 8227554 - 8227634
Alignment:
Q  24 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaaccat 104  Q
    ||||||||| |||  |||| || |||| || ||||||| |||||||| |||||||||  |||||| |||||||||||||||    
T  8227554 gagatttaacgatacaatggtggaaaataagtttgtgcgtggtacaaaactaatttgcgtgtgcacattagacaaaaccat 8227634  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 23681857 - 23681929
Alignment:
Q  27 atttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 99  Q
    ||||||||||| |||  ||||||| ||||||||| ||||| |||||  ||||| |||||||| ||||||||||    
T  23681857 atttaatgatcaaatagtgaaaaataaatttgtgtatggtgcaataaaaatttatttgtgcacattagacaaa 23681929  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 21001404 - 21001329
Alignment:
Q  24 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 99  Q
    |||||||||||||| || | || |||||||  ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  21001404 gagatttaatgatccaacggtggaaaacaagcttgtgcatggtgcaatactaatttgcttgcgcacattagacaaa 21001329  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 18910021 - 18910098
Alignment:
Q  24 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaaac 101  Q
    |||||||||||||  |||| | ||||| || |||||| ||| ||||| ||||| ||||||||| ||||||||||||||    
T  18910021 gagatttaatgattaaatggtaaaaaataagtttgtgtatgatacaagactaacttgtttgtgtatattagacaaaac 18910098  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 39992134 - 39992177
Alignment:
Q  59 tgcatggtacaatactaatttgtttgtgcatattagacaaaacc 102  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  39992134 tgcatggtgcaatactaatttatttgtgtatattagacaaaacc 39992177  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 13587676 - 13587745
Alignment:
Q  24 gagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatatta 93  Q
    |||||||||||||  ||||||  |||| || |||| |||| |||||||||||||||||||| ||||||||    
T  13587676 gagatttaatgattcaatgctagaaaataagtttgcgcatagtacaatactaatttgtttgcgcatatta 13587745  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 6061489 - 6061452
Alignment:
Q  62 atggtacaatactaatttgtttgtgcatattagacaaa 99  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6061489 atggtgcaatactaatttgtttgtgcatattagacaaa 6061452  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 6058583 - 6058546
Alignment:
Q  62 atggtacaatactaatttgtttgtgcatattagacaaa 99  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  6058583 atggtgcaatcctaatttgtttgtgcatattagacaaa 6058546  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 36418200 - 36418234
Alignment:
Q  66 tacaatactaatttgtttgtgcatattagacaaaa 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  36418200 tacaatactaatttttttgtgcatattagacaaaa 36418234  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 45466544 - 45466467
Alignment:
Q  22 aagagatttaatgatctaatgctgaaaaacaaatttgtgcatggtacaatactaatttgtttgtgcatattagacaaa 99  Q
    ||||||| |||||||| |||| | ||||  ||  || |||||| | |||||||||||||||||||| |||||||||||    
T  45466544 aagagatataatgatccaatgataaaaattaagcttctgcatgttgcaatactaatttgtttgtgcgtattagacaaa 45466467  T

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