View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701_low_37 (Length: 234)

Name: NF1701_low_37
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701_low_37
NF1701_low_37
[»] chr6 (4 HSPs)
chr6 (1-87)||(7326210-7326296)
chr6 (168-234)||(7326481-7326547)
chr6 (103-168)||(7326393-7326453)
chr6 (110-153)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (89-153)||(35130658-35130723)
chr4 (103-153)||(13538317-13538367)
chr4 (111-152)||(49479453-49479494)
chr4 (89-153)||(17882291-17882355)
chr4 (90-153)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (110-154)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (89-153)||(30746010-30746074)
chr7 (103-153)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (110-154)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (110-150)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (89-155)||(32594558-32594625)
chr3 (110-153)||(52093594-52093637)
chr3 (110-153)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (120-154)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7326210 - 7326296
Alignment:
Q  1 ctaaaatgttgtttgctgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 87  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326210 ctaaaatgttgtttgctgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 7326481 - 7326547
Alignment:
Q  168 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcat 7326547  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  103 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 168  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  89 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  103 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  111 aaattattcctgatagctaccaactgaactatacttacggga 152  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  89 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  90 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgggaca 154  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  89 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  103 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgggaca 154  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgg 150  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  89 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 155  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  110 caaattattcctgatagctaccaactgaactatacttacgggac 153  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  120 ctgatagctaccaactgaactatacttacgggaca 154  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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