View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_41 (Length: 229)
Name: NF1701_low_41
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 8974016 - 8974187
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
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| T |
8974016 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
8974115 |
T |
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| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtt |
212 |
Q |
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| T |
8974116 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtt |
8974187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 8962620 - 8962771
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
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| T |
8962620 |
acttggtaatggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaatttt |
8962719 |
T |
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| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatg |
192 |
Q |
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| T |
8962720 |
acagaactaatcagagtgaagagcgagattgtggtttgtgaagacaagaatg |
8962771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 8946470 - 8946351
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
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| T |
8946470 |
acttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgtt |
8946371 |
T |
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| Q |
141 |
acacaactaatcaaagtgaa |
160 |
Q |
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||| || ||||||||||||| |
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| T |
8946370 |
acagaattaatcaaagtgaa |
8946351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 21687618 - 21687458
Alignment:
| Q |
41 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
140 |
Q |
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|||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| || |
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| T |
21687618 |
acttggtaatggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgtt |
21687519 |
T |
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| Q |
141 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttc |
201 |
Q |
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| T |
21687518 |
aaagaattaaacacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttc |
21687458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
153 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
197 |
Q |
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| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
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