View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701_low_48 (Length: 218)
Name: NF1701_low_48
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 27720099 - 27720268
Alignment:
| Q |
29 |
ttacaacataattaaaatatgatataaatgtcatagttttgagtcaaataaaa-gcatccaaagtgtaacgaataagtgcaaattacaataaatatcaaa |
127 |
Q |
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| T |
27720099 |
ttacaacagaattaaaatatgatataaatgtcatagttttgagtcaaataaaaagcatccaaagtgtaatgaataagtgcatattacaataaatatcaaa |
27720198 |
T |
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| Q |
128 |
aggttatgattaattaattaactctagttttatatgaaattagaattattatatatgtgtggattgtcgg |
197 |
Q |
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| T |
27720199 |
aacttatgattaattaattaactctagttttatatgaaattagaattattatatatgtgtgggttgtcgg |
27720268 |
T |
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