View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17020_high_13 (Length: 358)

Name: NF17020_high_13
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17020_high_13
NF17020_high_13
[»] chr4 (1 HSPs)
chr4 (5-358)||(33387920-33388273)
[»] chr3 (1 HSPs)
chr3 (5-358)||(20816831-20817184)
[»] chr1 (3 HSPs)
chr1 (211-358)||(38779167-38779314)
chr1 (78-204)||(38778622-38778748)
chr1 (5-75)||(38778443-38778513)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 358
Target Start/End: Original strand, 33387920 - 33388273
Alignment:
Q  5 tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt 104  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387920 tgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt 33388019  T
Q  105 tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388020 tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac 33388119  T
Q  205 cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc 304  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388120 cgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc 33388219  T
Q  305 ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388220 ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaa 33388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 358
Target Start/End: Complemental strand, 20817184 - 20816831
Alignment:
Q  5 tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt 104  Q
    ||||||| | ||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | |||||| |||||||||||||||||||| ||||| |    
T  20817184 tgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacat 20817085  T
Q  105 tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac 204  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||| |||||||| ||||||  |||||| ||| ||||||| |||||||||||||||||    
T  20817084 tcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtac 20816985  T
Q  205 cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc 304  Q
     || | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  20816984 tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactc 20816885  T
Q  305 ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaa 358  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||    
T  20816884 ataatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaa 20816831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 211 - 358
Target Start/End: Original strand, 38779167 - 38779314
Alignment:
Q  211 catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc 310  Q
    ||||||||| |||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38779167 catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc 38779266  T
Q  311 tcacccagctttgttaagttaccttcatcatcaattgcacctaagtaa 358  Q
    ||||| |||||||||||||||||||||||||| | |||||| ||||||    
T  38779267 tcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaa 38779314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
Q  78 tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc 177  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| ||    
T  38778622 tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc 38778721  T
Q  178 cctaggccgaataaagcaattgggtac 204  Q
    ||||||||| |||||||||||||||||    
T  38778722 cctaggccggataaagcaattgggtac 38778748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38778443 - 38778513
Alignment:
Q  5 tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctc 75  Q
    ||||||| | ||||||||||||| |||||||| | |||||| ||||| || ||||||||||| | ||||||    
T  38778443 tgtcgaacattatcagctgatttaagcgccctattattaacgaagttgtcgtagcaccaagaagcatcctc 38778513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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