View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_18 (Length: 347)
Name: NF17020_high_18
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_18 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 30613907 - 30614235
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttctctccacttcc |
119 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30613907 |
gacatcatcaacatcaatatgcaacaccacatataataataacaacctacattctactaccaactcctcctcccacacccgtaaacttctctccacttcc |
30614006 |
T |
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| Q |
120 |
acgcctcccccctcgtcccaccgcaagttaaatatttgtgccaccatgttgcatatttattttttgataaatcaaataaccgacgaaaacaaacctgaag |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
30614007 |
acgcctcccccctcgtcccaccccaagttaaatatttgcgccaccgtgttgcatatttattttctgataaatcaaataaccgacaaaaacgaacctgaag |
30614106 |
T |
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| Q |
220 |
aggaacgtcacctacctgttaatgttttattaacgaaaaaatttattaataaccaaatctctgcacagtattcttt-nnnnnnngtccatatacaagaat |
318 |
Q |
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||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||| ||||||||||| |
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| T |
30614107 |
aggaacgtcgcctacctgttaatattttattaacagaaaagtttattaataaccaaatctctgcgcaatattctttgaaaaaaagtccctatacaagaat |
30614206 |
T |
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| Q |
319 |
aacagagaccgcgaaacagaaacatgtaa |
347 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
30614207 |
aacagagacagcgaaacagaaacatgtaa |
30614235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 10382788 - 10382713
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccac |
95 |
Q |
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| T |
10382788 |
gacatcatcaacattaacctgcaacaccacagttagtaataacaacctagattcccctaacaactcctcctcccac |
10382713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 17185729 - 17185679
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctaca |
70 |
Q |
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| T |
17185729 |
gacatcatcaacattaacctgcaacacaacattcaataatagcgacctaca |
17185679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 1536 - 1426
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccactt |
117 |
Q |
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|||||||||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| ||||||||| |
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| T |
1536 |
gacatcatcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccactt |
1438 |
T |
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| Q |
118 |
ccacgcctcccc |
129 |
Q |
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||| |||||||| |
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| T |
1437 |
ccatgcctcccc |
1426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 6476 - 6366
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccactt |
117 |
Q |
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|||||||||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| ||||||||| |
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| T |
6476 |
gacatcatcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccactt |
6378 |
T |
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| Q |
118 |
ccacgcctcccc |
129 |
Q |
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| T |
6377 |
ccatgcctcccc |
6366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 25094760 - 25094807
Alignment:
| Q |
174 |
atttattttttgataaatcaaataaccgacgaaaacaaacctgaagag |
221 |
Q |
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||||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
25094760 |
atttattttctgataaaataaataagcgacgaaaacaaacctgaagag |
25094807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1073776 - 1073826
Alignment:
| Q |
20 |
gacatcatcaacatcaacctgcaacaccacatacaataataacaacctaca |
70 |
Q |
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|||||||||||||| ||||||||| || ||| |||||||||||| |||||| |
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| T |
1073776 |
gacatcatcaacattaacctgcaatacaacagacaataataacatcctaca |
1073826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 17620287 - 17620369
Alignment:
| Q |
59 |
taacaacctacattttactaccaactcctcctcccacacccgtaaacttct-ctccacttccacgcctc-ccccctcgtccca |
139 |
Q |
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| T |
17620287 |
taacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctccccctcgtccca |
17620369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 13897204 - 13897252
Alignment:
| Q |
238 |
ttaatgttttattaacgaaaaaatttattaataaccaaatctctgcaca |
286 |
Q |
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||||| |||| ||||||| |||||||||||||||| |||| |||||||| |
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| T |
13897204 |
ttaatatttttttaacgataaaatttattaataactaaatatctgcaca |
13897252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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