View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_1_N (Length: 472)
Name: NF17020_high_1_N
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 10194538 - 10194107
Alignment:
| Q |
14 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtcgagtgagatgaactgtgctggcttgagttttggaa |
113 |
Q |
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| T |
10194538 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgt--attgagatgagctgtgctggcttgagttttggaa |
10194441 |
T |
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| Q |
114 |
acaaagcattcgattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttaggg |
213 |
Q |
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| T |
10194440 |
acaaagcattctattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttaggg |
10194341 |
T |
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| Q |
214 |
ttttct---------tgtcaattataatttgcgatttatgatcaaacactgttaggcggcatgttcagtaacagatgagttcgaattccttgatcctgat |
304 |
Q |
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| T |
10194340 |
ttttctggtttttcttgtcaattataatttgcgatttatgatcaaacactgttaggctgcatgttcagtaacagatgagttcgaattccttgatcctgat |
10194241 |
T |
|
| Q |
305 |
atcaggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgatgcgatgcagtttatgacaaattgcaata |
404 |
Q |
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| T |
10194240 |
atcaggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgattc-----agtttatgacaaattgcaata |
10194146 |
T |
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| Q |
405 |
ccagattatgtactactggtataaggttatagaacacat |
443 |
Q |
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| T |
10194145 |
ccagattatgtactactggtataaggttatagaacacat |
10194107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 19459169 - 19459304
Alignment:
| Q |
14 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtcgagtgagatgaactgtgctggcttgagttttggaa |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |
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| T |
19459169 |
gaacctgtgattttgctgattagcttcagtggatttaaaccgtattttaatcaaaagctattgt--attgagatgagctgtgctggcttgagttttggaa |
19459266 |
T |
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| Q |
114 |
acaaagcattcgattttgaataagtaacgcatttaaag |
151 |
Q |
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|||||| || ||||||||| |||||||||||| |||| |
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| T |
19459267 |
acaaagagtttgattttgaacaagtaacgcattcaaag |
19459304 |
T |
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