View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_20 (Length: 334)
Name: NF17020_high_20
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 29100601 - 29100914
Alignment:
| Q |
1 |
catgagtctccatctggaatcaggtcattcaggaaaatagaatctctaaagattggtcaaaaggtaaccttaattggcccttcatttctaatcctaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29100601 |
catgagtctccatctggaatcaggtcattcaggaaaatagaatctctaaagattggtcaaaaggtaaccttaattggcccttcatttctaatcctaaagt |
29100700 |
T |
|
| Q |
101 |
tttaaatgaaatgtgttttatctgtttgataagcctttatttttgcttcacagattgtcagagatagcaaggatgattcggggcggttctctggattgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29100701 |
tttaaatgaaatgtgttttatctgtttgataagcctttatttttgcttcacagattgtcagagatagcaaggatgattcggggcggttctctggattgtt |
29100800 |
T |
|
| Q |
201 |
atcttctagtgactcaccacgcattggagcttcgagaacatcaagtagtagattatcttttcaggatgacttggatgatggtgacttttcgtgtcctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29100801 |
atcttctagtgactcaccacgcattggagcttcgagaacatcaagtagtagattatcttttcaggatgacttggatgatggtgacttttcgtgtcctttt |
29100900 |
T |
|
| Q |
301 |
gatgttgatgatgt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
29100901 |
gatgttgatgatgt |
29100914 |
T |
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