View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_21 (Length: 334)
Name: NF17020_high_21
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 24 - 334
Target Start/End: Complemental strand, 21346142 - 21345832
Alignment:
| Q |
24 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346142 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
21346043 |
T |
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| Q |
124 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346042 |
tggagaattctccagatgctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
21345943 |
T |
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| Q |
224 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
323 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21345942 |
attttattaaaatccatgaatgatgcgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
21345843 |
T |
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| Q |
324 |
tgtggtggaat |
334 |
Q |
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||||||||||| |
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| T |
21345842 |
tgtggtggaat |
21345832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 24 - 334
Target Start/End: Complemental strand, 22872 - 22563
Alignment:
| Q |
24 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22872 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
22773 |
T |
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| Q |
124 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22772 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgcgagtatgaacc |
22673 |
T |
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| Q |
224 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
323 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22672 |
attttattaaaatccatgaatgattcgtcaagaattttacagagaatacgctggaagttgattgcatatggactgcttttctgttatac-ttatgattca |
22574 |
T |
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| Q |
324 |
tgtggtggaat |
334 |
Q |
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||||||||||| |
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| T |
22573 |
tgtggtggaat |
22563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 326
Target Start/End: Complemental strand, 29381216 - 29380915
Alignment:
| Q |
24 |
catcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgcct |
123 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29381216 |
catcatcaaaggatttaggtttacaaagtttgaatctgtttcacttttttgcattgtgcagatgataaagtaactgttttggagtcagaaaagcgcgcct |
29381117 |
T |
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| Q |
124 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaacc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |
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| T |
29381116 |
tggagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgtgagtatgagcc |
29381017 |
T |
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| Q |
224 |
attttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattca |
323 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29381016 |
attttattaaaatccatgaatgatttgtcaagaattttaccgagaatacgctggaagtcgattgcatatggactgcttttctgttatac-ttatgattca |
29380918 |
T |
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| Q |
324 |
tgt |
326 |
Q |
| |
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||| |
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| T |
29380917 |
tgt |
29380915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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