View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_24 (Length: 322)
Name: NF17020_high_24
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 27442261 - 27441950
Alignment:
| Q |
1 |
gatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442261 |
gatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacc |
27442162 |
T |
|
| Q |
101 |
tgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaatattaggtgcttggaagaataagaagtagtcaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27442161 |
tgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaaaattaggtgcttggaagaataagaagtagtcaa |
27442062 |
T |
|
| Q |
201 |
ggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttagtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442061 |
ggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttagtaa |
27441962 |
T |
|
| Q |
301 |
aattcatctctg |
312 |
Q |
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|||||||||||| |
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| T |
27441961 |
aattcatctctg |
27441950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 11855651 - 11855511
Alignment:
| Q |
1 |
gatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacc |
100 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || |||||| |||| |||| || |
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| T |
11855651 |
gatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattgacttgtatatgggtttgcc |
11855552 |
T |
|
| Q |
101 |
tgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
141 |
Q |
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| ||| | |||||||| | |||| |||||||||||||||| |
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| T |
11855551 |
tcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 11850883 - 11851011
Alignment:
| Q |
13 |
atgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgag |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| || |||||| ||| ||||| ||| ||| | | || |
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| T |
11850883 |
atgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgggattgacttggatataagttttcctcaaggacttag |
11850982 |
T |
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| Q |
113 |
taagtggaagaaccttgaaggaatgagca |
141 |
Q |
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||||||| ||| |||||||||| ||||| |
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| T |
11850983 |
taagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 11838191 - 11838328
Alignment:
| Q |
4 |
acgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctga |
103 |
Q |
| |
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||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| || |||||| ||||||||| ||| | |
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| T |
11838191 |
acgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgggattgacttggatatgagtttgcctca |
11838290 |
T |
|
| Q |
104 |
agaaatgagtaagtggaagaaccttgaaggaatgagca |
141 |
Q |
| |
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|| | ||| ||||||| |||| | |||||||||||||| |
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| T |
11838291 |
agcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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