View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17020_high_29 (Length: 309)

Name: NF17020_high_29
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17020_high_29
NF17020_high_29
[»] chr2 (7 HSPs)
chr2 (135-289)||(19138361-19138515)
chr2 (59-137)||(17164592-17164670)
chr2 (59-137)||(36250577-36250655)
chr2 (1-58)||(19138303-19138360)
chr2 (59-111)||(19877507-19877559)
chr2 (59-137)||(32212942-32213020)
chr2 (59-139)||(24168198-24168278)
[»] chr3 (8 HSPs)
chr3 (59-137)||(24700097-24700175)
chr3 (59-137)||(8485965-8486043)
chr3 (61-137)||(27237964-27238040)
chr3 (76-137)||(54737170-54737231)
chr3 (59-137)||(47425146-47425224)
chr3 (59-110)||(32834615-32834666)
chr3 (59-103)||(25574666-25574710)
chr3 (59-111)||(46225068-46225120)
[»] chr5 (4 HSPs)
chr5 (59-131)||(17042198-17042270)
chr5 (60-139)||(7933407-7933486)
chr5 (60-139)||(34702904-34702982)
chr5 (199-247)||(34693346-34693394)
[»] chr8 (3 HSPs)
chr8 (58-137)||(19177952-19178030)
chr8 (59-139)||(28239295-28239375)
chr8 (68-137)||(12814983-12815053)
[»] chr4 (6 HSPs)
chr4 (59-137)||(5155502-5155580)
chr4 (59-139)||(17722293-17722373)
chr4 (59-137)||(51746198-51746276)
chr4 (59-137)||(2594448-2594526)
chr4 (59-136)||(17641348-17641425)
chr4 (59-127)||(1979391-1979459)
[»] scaffold0234 (1 HSPs)
scaffold0234 (59-137)||(6945-7023)
[»] chr6 (4 HSPs)
chr6 (66-131)||(16548292-16548357)
chr6 (60-137)||(16730436-16730513)
chr6 (59-137)||(21224552-21224629)
chr6 (59-127)||(27966300-27966368)
[»] chr7 (5 HSPs)
chr7 (59-137)||(8981547-8981625)
chr7 (57-137)||(7705932-7706012)
chr7 (59-137)||(31715307-31715385)
chr7 (59-139)||(26263058-26263138)
chr7 (59-139)||(32913690-32913770)
[»] chr1 (2 HSPs)
chr1 (59-139)||(21112740-21112819)
chr1 (59-139)||(21117482-21117562)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 19138361 - 19138515
Alignment:
Q  135 tgatgaggttctaagcttcaccagaaaatctgcacactagttcccttctattagaatatgagtaatagagacattggtttgagagatgaggtctttaatg 234  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19138361 tgatgaggttctaagcttcatcagaaaatctgcacgctagttcccttctattagaatatgagtaatagagacaatggtttgagagatgaggtctttaatg 19138460  T
Q  235 tcttggattaaaactacatacacctgacaattcacaagggggccattgatgatgt 289  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19138461 tcttggattaaaactacatacatctgacaattcacaagggggccattgatgatgt 19138515  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 17164592 - 17164670
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17164592 cactactacataaatgacatttcacatcggttgaaatcgacatttcacatcgggtggcaaccgatgtaactaaaggtga 17164670  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 36250655 - 36250577
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  36250655 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 36250577  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19138303 - 19138360
Alignment:
Q  1 tcattccttagcagattgaggattctgaatgttacccatgaattagcaaactagaatc 58  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  19138303 tcattcctcagcagattgaggattctgaagattacccatgaattagcaaactagaatc 19138360  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19877559 - 19877507
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 111  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  19877559 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgg 19877507  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 32212942 - 32213020
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||||||||||    
T  32212942 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtga 32213020  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 24168278 - 24168198
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| | ||||||||||||||||||| || |||||| || ||||||||||| |  || | |||||||| ||||||||||    
T  24168278 cactactatagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccaccagatgtaacgaaaggtgatg 24168198  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 24700097 - 24700175
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  24700097 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcggtttccaaccgatgtaactaaaggtga 24700175  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 8485965 - 8486043
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  8485965 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 8486043  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 27238040 - 27237964
Alignment:
Q  61 ctacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||| ||||||||||||| | |||||||||||||||||| ||| ||||| | ||||||||||||||||||| |||||    
T  27238040 ctactacagaaatgacatcttacatcggttgaaatcgacttttaacatcaggtggcaaccgatgtaactaagggtga 27237964  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 54737170 - 54737231
Alignment:
Q  76 catttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    ||||| |||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  54737170 cattttacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 54737231  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 47425224 - 47425146
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||||||||||||||||||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||    
T  47425224 cactactacagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccagccgatgtgactaaaggtga 47425146  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 32834615 - 32834666
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcg 110  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||||||||    
T  32834615 cactactacagaaatgacatttcacatcggtcaaaatcgacttttcacatcg 32834666  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 25574710 - 25574666
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacattt 103  Q
    |||||| ||||||||||||||||||||| || |||||||||||||    
T  25574710 cactactacagaaatgacatttcacatcagtggaaatcgacattt 25574666  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 46225068 - 46225120
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 111  Q
    |||||| ||| ||||||||||||| |||| | ||||| |||||||||||||||    
T  46225068 cactactacataaatgacatttcatatcgatggaaattgacatttcacatcgg 46225120  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 17042198 - 17042270
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaa 131  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17042198 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtgccaaccgatgtaactaa 17042270  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 7933407 - 7933486
Alignment:
Q  60 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||| |   ||||||||| ||||||| |||||    
T  7933407 actactacagaaatgacatttcacatcggttggaatcgatatttcacatcgggtcctaaccgatgtcactaaagatgatg 7933486  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 34702982 - 34702904
Alignment:
Q  60 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    ||||||||||||||||||||||||||| | | | || ||| ||||||||||| |  || |||||||||||||||| ||||    
T  34702982 actacaacagaaatgacatttcacatctg-taatattgacttttcacatcggttcccagccgatgtaactaaaggcgatg 34702904  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 34693394 - 34693346
Alignment:
Q  199 atagagacattggtttgagagatgaggtctttaatgtcttggattaaaa 247  Q
    |||||||||||  |||||||||||||||||||||| | ||||| |||||    
T  34693394 atagagacattattttgagagatgaggtctttaatattttggactaaaa 34693346  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 19177952 - 19178030
Alignment:
Q  58 ccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||| |||||||||    
T  19177952 ccactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg-taccaaccgatgtaattaaaggtga 19178030  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28239295 - 28239375
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| ||| ||||||||||||||||| || ||||| ||||||||||||||| |  |||||||||| |||||||||||||    
T  28239295 cactactacataaatgacatttcacatcagtggaaattgacatttcacatcgggtcccaaccgatgtcactaaaggtgatg 28239375  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 12814983 - 12815053
Alignment:
Q  68 agaaatgacatttcacatcggttgaaatcgacattt-cacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||||| ||||||||||  ||||||||||| ||| |||||||| || || |||||||||||||||||||    
T  12814983 agaaatgagatttcacatcacttgaaatcgactttttcacatcgggtgacacccgatgtaactaaaggtga 12815053  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 5155502 - 5155580
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  5155502 cactactacagaaatgacatttcacatcagtggaaatcgacatttcacatcgggtcccaaccgatgtaactaaaggtga 5155580  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 17722293 - 17722373
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| ||||||||||||||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||||||||||    
T  17722293 cactactacagaaatgacatttcacatcggttgaaatcaacttttaacatcgggtgccaaccgatgtacctaaaggtgatg 17722373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 51746276 - 51746198
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |  | ||||||||||||||||||||    
T  51746276 cactactacagaaatgacatttcacatcggtggaaaacgacttttcacatcgggtccctaccgatgtaactaaaggtga 51746198  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 2594448 - 2594526
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||||||||||    
T  2594448 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtga 2594526  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 17641348 - 17641425
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtg 136  Q
    |||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||| |   ||||||||| ||||||||||    
T  17641348 cactactacataaatgacatctcacatcggttggaattgacatttcacatcgggtcctaaccgatgtcactaaaggtg 17641425  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 1979391 - 1979459
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 127  Q
    ||||||| |||||||||  ||||||||| |||||||  ||  ||||||||||| || ||||||||||||    
T  1979391 cactacagcagaaatgatttttcacatcagttgaaaatgatttttcacatcggttgacaaccgatgtaa 1979459  T

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Target: scaffold0234 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 7023 - 6945
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |  |||||||||||||||| |||||    
T  7023 cactactacagaaatgacatttcacatcgattgaaattgacatttcacatcgggtaccaaccgatgtaactaagggtga 6945  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 16548292 - 16548357
Alignment:
Q  66 acagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaa 131  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||    
T  16548292 acagaaatgacatttcacattagttgaaatcgacatttcacatcgggtaccaaccgatgtaactaa 16548357  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 16730513 - 16730436
Alignment:
Q  60 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    ||||| ||||||||||||||| ||||| || ||||||||| |||||||| || |  || |||||||||||||||||||    
T  16730513 actactacagaaatgacatttaacatcagtggaaatcgacttttcacattgggtcccagccgatgtaactaaaggtga 16730436  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 21224552 - 21224629
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||||||||||||||| ||||| || ||||||||| ||||||||||| |  || ||||||| |||||||||||    
T  21224552 cactactacagaaatgacatttaacatcagtggaaatcgacttttcacatcgggtcccacccgatgt-actaaaggtga 21224629  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 27966368 - 27966300
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 127  Q
    |||||| |||||||| |  ||||||||| ||||||| | || ||||||||| | |||||||||||||||    
T  27966368 cactactacagaaataagttttcacatcagttgaaaactacttttcacatcaggtggcaaccgatgtaa 27966300  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 8981547 - 8981625
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| |||||||||||||| ||||||||||| ||||||| ||||||||||| |  |||| |||||| ||||||||||    
T  8981547 cactactacagaaatgacattccacatcggttggaatcgacttttcacatcgggtcccaacggatgtagctaaaggtga 8981625  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 7705932 - 7706012
Alignment:
Q  57 tccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||||| |||||||| |||||||||||| || ||||| ||||||||||||||| |  || ||||||| |||||||||||    
T  7705932 tccactactacagaaatcacatttcacatcagtggaaattgacatttcacatcgggtcccagccgatgtgactaaaggtga 7706012  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 31715385 - 31715307
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 137  Q
    |||||| ||| ||||||||||||||||| ||  || ||||| ||||||||||| |  ||||||||||||||||||||||    
T  31715385 cactactacaaaaatgacatttcacatcagtgaaattcgacttttcacatcggatcccaaccgatgtaactaaaggtga 31715307  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 26263058 - 26263138
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| ||| |||||| |||||||||| || ||||||||| |||||||| || |  || |||||||||||||||||||||    
T  26263058 cactactacataaatgaaatttcacatcagtggaaatcgacttttcacattgggtcccacccgatgtaactaaaggtgatg 26263138  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 32913690 - 32913770
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| ||||||||||||||||||||  || ||| ||||| ||||| ||||| |  || |||||||||||||||||||||    
T  32913690 cactactacagaaatgacatttcacattagtggaattcgacttttcaaatcggatcccacccgatgtaactaaaggtgatg 32913770  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 21112740 - 21112819
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| ||||||||||||||| ||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||||    
T  21112740 cactactacagaaatgacatttaacatcagtggaaatcaacttttcacatcgg-tcccacccgatgtcactaaaggtgatg 21112819  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 21117482 - 21117562
Alignment:
Q  59 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 139  Q
    |||||| |||||||||| |||| ||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||||    
T  21117482 cactactacagaaatgatatttaacatcagtggaaatcaacttttcacatcgggtcccacccgatgtcactaaaggtgatg 21117562  T

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